CI01000016_08926089_08945071


Basic Information

Item Value
gene id CI01000016_08926089_08945071
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8925960 ~ 8945229 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08926089_08945071.mRNA
ATGGACGAGAACCCAGCTGTTCATCAGGAAATGGTCACGACGCCAGAGGAACAGCCTCGTTCTGATGAGCCAAATCCAATGGGCTGCAACAAGTACTGCAGTCTCTTATTGGTCCTCTTTGCCTTCTCTCTCTTTTCAACTACGTTAGGTTTGGCTATCTATTCCCACCTGCAAAAGGAATCACAATGGAAATCAGCTGCACCTCCTTGCCTTTCTCCCGCCTGTCTAAGGGCATCAGAGCATTTTTCTCTTGACATGGATCCCTTTTCTCGCCCTTGTGACTACTTCCTATATGCCTGTGGAGCAGGTGGATCTTCCACCAACAAGGGGAGACTCAGTGGGTTCTCCAATGAAGACAATGGGGAACCGGACAAAAAACGAGAAGTGAGCATGGGTGGATTAGTGAGGATGAGAAGAGAGGCAGATGTTCACGTTAAAAGTGATGGACGGCTAGATAAATTTCCAGACAGACAGACTGCTTTACTGAAAGCCATTAAAGAAATACTAGATCCAACTGCCCAGTTTCAGAGGAAGATTGAGATGTTTCTTCAGAAAGCACATGCTCATCTATTGATTTCTGATAAAGAGATGCAATACTTGCTCAGTCGTTCTCCAAGTAGGCCAGTTTTCTACATTCTACCCAAGGTACATAAAAGCTTGGTCAATCCACCAGGACGGCCTATAGTAGCTGGTAACAATAGTCTTACTGAACCACTCTCGAATTTTGTTGATTTTGTTCTGAGACCGTTAGTCCTTCCTAGTTATCTGAGTGACACAGCAGATTTCCTGCAATGTCTAACAACTATTCAAAATGTTGAGCAGGATGTTATACTGGACACTATGGATGTGACTTCGTTATATACCAATATTCCACATCATGAAGGTCTATTGGCCTTAAAACATTTTCTTGATTTACGTGTTGAAGATGATGGCCTTCCGTCTAAATTTATCATTGAAATGGCTGAAATGGTTCTCACTAAAAAGTATTTTTTATTTGAAAAACGGTATTATTTACAGATTGAGGGCACTGCCATAGGGGCCACCATGGCTCCTGACTATGCCAATTTATATCTGGGCTTTTTGGAGGATAGATATGTTTTCAACAACAATCCTTTTTTTGACAATATCATTCTGTTTAAGAGATACACTGATGATTGTTTTGTTATTTACAAAGGTTCTGCAAGTGATCTTGAAGCATTTGTTCTATATATGAATTGTTTAAGACCTTCGATTAAGTTCACACATAATGTGGGTATTACAAATGTTAATTTCTTGGATACTTGTATATCAATTGTTGAGAAACAAATCGTATCTTCTCTTTATAGAAAAGATACAGCTAAGAACAGTCTCCTTCATGCTACTAGTGCCCATCCAATCCCTTTAAAACTTGGGTTACCCTATAGTAAATTTTTAAGACTCCACCGTATCTGCTCTAGGAAGGAGGATTTTGATGTTAAAACCCAGAATCTATATGCAGATTTTAAATCACGTGGATATCCCAACAAGTGGCTTGATACTGCACTTGAGAAAGTGCGTAGTTTACAGGAACGGGAATATTTGCGTCCATTCTATTCGTCCTGTGGTCAGTATTTGGCTCTCTTGGGTGTTCCCTCCAATGGAACCACTCAGCACTGTGGTCTTTACATATCTCTGTCCACAACTCTCGCTGTGGCCACATCACCTCTTCACTACCGCCTCAGTCAGAAGTTGCTCTACCACAGAATTACCATCCAAGAGCTACAGACTCGGGCTTCAGCCATTGATTGGCTTGCTTGCCTACAAGCCATATTTCAGCCTCTTCCTATCAGCCAATCAGATATTGTTTTAGTCCACAATCTCCCGTACATTATCCACATGTCCCAGACAATCAGCCAGTGGCAATTCCAGCATGAGATTATGGGCACTGGTCCTCTTCACACATACATGATCTTTAGTCTTTTGCAAACACTCATACCTTCGCTGGACTCGAGGTTCTTCCAAACAATGAGAAACTATTCAATTGTGACTGGAGACATGCAGGAGGAGATGCCACACTGGTGGCGATGTGTTCAGCAGACCGAGAGAGGATTTGATGTCTTACTCAGTCATGTAATTAGAGAACGCCATGCACAGAAAGAGGCTGAAGAGTTGATTCATGATGTTTATTCATCCCTCAAGAAGAAACTAACAGATCTTAGCTGGAGGGACAAAACAACATCAGGCTTTATTTTGAATAAGATAAAATCTTTTAATCCAAGACTCTCCACTAAAACAAATAATCTCAATCATACAGAAATCAACCTTCTCTATGCAGAGATGGTTTTGAAAGAGGAGGATTTTTTCTCCAACTACCTGCAGATGCTGGTGCTGGAGCAGAAGAGCAGGTACAGACTGCTCTCACACGGCACATGGACTGAAGGTTTGTCTATCACTCCATCCATCTCTGGTAATGACATCATCATCCCTGTTGGAATGTTTGTTTTGCCTTTCTTCCATTCTTCATATCCCAGGGCACTGAATTATGGGACACTGGGATCTCTGATGGCTAAAGATCTTCTCCACCTTCTGCTTCCTGATATCCGCACACAGGCCGACAACCCAGAGTCTGAGAGTATGTGTGTGTGGTCTCATTATCTAAGTATGACCAAGGGTCCGGGACAGGCTGGCACATTCTCCCTTCCCCCCTCTAAACAGCAGGAGGTTTGGGTGCAGTACTCTGCTCTACAGGTGGCACTGGATGCTTATAAGATGAGTTTCAAAAGGCATCCAATAGACTCATCACTATCAGGCCTCTCTTACATTCACCTGTTCCTCTCATCCTTTACTAAGGTAACGTGTGACGCTGACTCCTACCGCGAGTTCATGCCCTTTGAACCTTCCTTCCTGGTGACTGTCCTGTGTTCGAACTCAAGCTTCTGCCCCAAACCGCTGACCTGCCTGAATAAATCTCAGAGTTTTCCTCATGAGATGTGTCAGAGTTGATCACTGCACTGAATCTGCGAGGAACACATCTCCACTGAGACCTGTTGGAGCTGGTTTGGGACTATTGAACCATTGGAGCTGCTCAATGTTTAGTGAAAATAGGAGAAAGTCATTCCAGAGATCATTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08926089_08945071.mRNA False 3090 mRNA 0.43 16 8925960 8945071

Neighbor

gene id symbol gene type direction distance location
CI01000016_08920718_08923668 EMG1 coding downstream 1912 8920465 ~ 8924048 (-)
CI01000016_08906943_08914821 NOP2 coding downstream 11020 8906612 ~ 8914940 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 coding downstream 31267 8888833 ~ 8894737 (-)
CI01000016_08881761_08888177 GAPDH coding downstream 37723 8881551 ~ 8888237 (-)
CI01000016_08871984_08874796 OPN9 coding downstream 51164 8871984 ~ 8874796 (-)
CI01000016_08947581_08961131 ZYX coding upstream 1077 8946148 ~ 8961131 (-)
CI01000016_09060801_09086358 CLCN1B coding upstream 115451 9060522 ~ 9088199 (-)
CI01000016_09107780_09122244 CASP2 coding upstream 162338 9107409 ~ 9122290 (-)
CI01000016_09129190_09132103 NA coding upstream 182537 9127608 ~ 9132103 (-)
CI01000016_09164404_09171973 CCDC106A, CCDC106 coding upstream 219333 9164404 ~ 9174758 (-)
G98658 NA non-coding downstream 192 8924510 ~ 8925768 (-)
G98672 NA non-coding downstream 9287 8915922 ~ 8916673 (-)
G98715 NA non-coding downstream 54444 8871275 ~ 8871516 (-)
G98709 NA non-coding downstream 109071 8816414 ~ 8816889 (-)
G98708 NA non-coding downstream 110259 8814845 ~ 8815701 (-)
G98694 NA non-coding upstream 112741 9057812 ~ 9058118 (-)
G98776 NA non-coding upstream 156530 9101601 ~ 9101813 (-)
G98778 NA non-coding upstream 158152 9103223 ~ 9103458 (-)
G98675 NA non-coding upstream 160323 9105394 ~ 9107226 (-)
G98666 NA non-coding upstream 211598 9156669 ~ 9158272 (-)
G97341 NA other downstream 2766239 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 3507743 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 3595114 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 4002556 4918975 ~ 4922518 (-)
G98679 NA other upstream 289925 9234996 ~ 9239929 (-)
G98691 NA other upstream 311031 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 564551 9509622 ~ 9512428 (-)
G99178 NA other upstream 869290 9814361 ~ 9814955 (-)
G100190 NA other upstream 1106097 10051168 ~ 10052389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010585 kel coding NC_007127.7 CM002900.2 17263027 ~ 17300030 (-)