CI01000016_09026732_09050431


Basic Information

Item Value
gene id CI01000016_09026732_09050431
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9026732 ~ 9050838 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09026732_09050431.mRNA
TTGTCCATGGAGGACACAACTTCAATCCTCCCTCGGCTGAAGAAGCGGAACTCCAACGCCTATGGAATCGGCGCTCTGGCTAAGTCCTCTCTGACAGGAGTGTCTCGCTCCATGAAGGACAAGGTGACAAAGCCAACAGCGATGGCCCAGGGGCGTGTGGCTCACATGATTGAGTGGCAGAGCTGGGGCATGCAGACGGTGGGCGCAGGGGGTACAGGAACGGGACGCACCTCCAGTCTGCACCTCCAACAAGAGCGCAAGCTGGAGAATGACGCATACAGCGACCTCAGTGACGGAGAGAAGGAGGCTCGCTTCGCTGCAGGTGTGCTTCAGCAGTTTGCAATCTCTGAGGCGACGTTGCTGGCCTGGAGCTCTATGGATGGGGAAAGCACAAGCGTCGGATCTAATCAAGGGAGTGTAGCCCACCTGAGTGAGGCCAACCAGGAAAGCATCACCAGCCGAGGTACTCACTACATTTCCCAGCATGCACTGCACACTGAACCAGCATCGCTACCACAGCATCCTGCAGCGACATGCCATCCCATCCGGTTTGCATTTAGTTGGACCATCATGGACCACAATGACCCCAAACACACCTTTAGGCTGTGTAAGGGCTATTTGACCAAGAAGGAGAGTGATGGAGTGCTGCGCCAGATGACCTGGCCTCCACAGTCACCTGACCTAAACCCAATCGAGATGGTTTGGGATGAGATGGACCGCAGAGTGAGTTACAAAATTACCATTCCAATTAGCTCATTTGCACGTTCTGCAACAACATCTCTTGCTCTGCTGGCTATAGCATCATGTTGGTGTTTAAATAGTACAGGTCCCAGTGGTCAGTTCAACAACGGCTTCGGTATCAGCAGCAAGAGCAGTAAAAACTTAATCAGGTTCCGTCATCCAGCCATTAACCAGAAGCCATTGATCGTTACAGTAATTGAGGTCTCACTGGAGCAAATGGGCAATCTAATACTACAAATCCCATCAGCCATTGCAGGGGGGTGGATGTTGGAGCAAAGACTACACAGTGCCACTCATTCTTTACAAGCTACTCCCAACAGCACCGTCCACAGCCTGCCTCCTCGTACTCACCCCCCATTAGTGGATCTGTGGGGGGCAGCACAGACAGAGACCTATCAGGCAGACTTGGTGGGCTACATGGGCATGCCTGTAGCAGTAGATGGAAATCTAACAGTCCCCACAGAGGAGGTGACGACAGATCACTCACCTTTACTGGAAGCCCAGGAGGAGGAAGAGATCAAATCTGTGGTCATGAATTCGTTTGAAAGACTGGTGCCAGCCCACCTGAAGGACATCATTGGACCCTTGCTGGACCCCCTGCAGTTTGCTTATCGAGCAAAGAGGTTTTTGGATGATGCAGTCAATGTGGGACTGCACTACATCCTGCAACATCTCAACAGACCTGGAACTTATGAGGAAGACATAACGTTATGTATGGAACCAGAACAAGTGACATTAATTCCATCTCCAGTGACGCAGAGAGAGGAAGTGACCTCAATGGGAGGAAGCAGTCCAGGTCAAGCCCCTGGAGAATTTATCACAGAGCGGAAGGCGTCTGATGTCTCACCGTCTGTAATTGAAGAGCTTGAAGAAAAGGAGGAGGAGTCAGAATCCTCAACTGTAGACATCAAGGCACCCAATTAAGTGGCCGGCGAGAGACTTGAGCTGGTTTTGACAGACATTTCAATCAGCATAATCAAACAATAACAACTCCTATTTCAGGAATCAAACACTATTGTGATGGAATTCAAGTGACTGCTCGAACCCAAAGTGGAAAAGCAGAACTGAAAGTTACTGCACTGCGTATGTGAACACTATAATTTTTTTGTTTGTTTGTTTTCTTTTTGTTTTTTGTAAGCCTTATATTATGGATGTCTGAAAAAGGAAGGCACAGAACGAAGTTGGGAAGTCCTTGGGACTGAGAAAGGAGAGAATGAAGAAAACGGAGCGATAGAGATGGAGGTATATGTAATTCAGGAAGATGAATATGAAGAACATTCGGTTAAATATGTGCATGCTTTTACAAGGAGTGATGGCACTCGTTATTCAAA

Function

NR:

description
LOC556725 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09026732_09050431.mRNA True 2072 mRNA 0.49 8 9026732 9050838

Neighbor

gene id symbol gene type direction distance location
CI01000016_08916022_08916606 NA coding upstream 110065 8915028 ~ 8916667 (+)
CI01000016_08817749_08824067 NA coding upstream 202654 8817749 ~ 8824078 (+)
CI01000016_08766170_08768621 LAG3 coding upstream 257954 8766170 ~ 8768778 (+)
CI01000016_08752386_08753821 RPL18.L, RPL18.S, RPL18 coding upstream 272911 8752386 ~ 8753821 (+)
CI01000016_08748359_08750572 NA coding upstream 275996 8748359 ~ 8750736 (+)
CI01000016_09138227_09156795 NA coding downstream 86596 9137434 ~ 9157472 (+)
CI01000016_09181426_09182326 NA coding downstream 130588 9181426 ~ 9182326 (+)
CI01000016_09183871_09184200 TMEM238 coding downstream 132538 9183376 ~ 9184427 (+)
CI01000016_09228083_09231481 NA coding downstream 177245 9228083 ~ 9231635 (+)
CI01000016_09240403_09243601 NA coding downstream 188907 9239745 ~ 9243601 (+)
G98362 NA non-coding upstream 37271 8989238 ~ 8989461 (+)
G98356 NA non-coding upstream 48192 8978232 ~ 8978540 (+)
G98289 NA non-coding upstream 81277 8943217 ~ 8945455 (+)
G98241 NA non-coding upstream 113949 8881009 ~ 8912783 (+)
G98272 NA non-coding upstream 131938 8889842 ~ 8894794 (+)
G98375 NA non-coding downstream 34390 9085228 ~ 9098103 (+)
G98385 NA non-coding downstream 74881 9125719 ~ 9125931 (+)
G98391 NA non-coding downstream 124361 9175199 ~ 9175960 (+)
G98392 NA non-coding downstream 160512 9211350 ~ 9211766 (+)
G98280 NA non-coding downstream 173611 9224449 ~ 9226908 (+)
G98288 NA other upstream 24015 8996098 ~ 9002717 (+)
G97824 NA other upstream 1010957 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1241009 7783987 ~ 7784996 (+)
G96389 NA other upstream 1865442 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3618869 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 744793 9795950 ~ 9842576 (+)
G99041 NA other downstream 873580 9924418 ~ 9925654 (+)
G99410 NA other downstream 1183562 10234400 ~ 10236851 (+)
G99456 NA other downstream 1243553 10294391 ~ 10298904 (+)
G99940 NA other downstream 2620807 11671645 ~ 11672873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004701 LOC103393816,LOC101468857,LOC106519603 coding CM030121.1 CM030121.1 56915322 ~ 56926198 (+)