CI01000016_09138227_09156795


Basic Information

Item Value
gene id CI01000016_09138227_09156795
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9137434 ~ 9157472 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09138227_09156795.mRNA
CTATAAAGAGAAAAGCAACAATCTTTTCTTTTGTCAGTTTTGTATTAATATCAAAGTCATTCAAGTGCACTAGTTTTTGTGAGATGTGTTTTGGTATTGTAGCCTATATGCTTTATATGTTCTCCTGCAATGAGTTTTTGTGATCTAGTTAGAAACTAACCAAGGCCATGATATTTGCACTTTTCTCCTTTTAGGATGTCAGTATATGCTCTTTGTCATTGTACTGGAAGTATCTGATTAGTTTATTGCAGTCTTCCCAAATTGATGATGATTGATCATTTATCTTAACCTTTGTCCATGACATTTAATTGATTTGTATAAGTTTTGTTTAGATTGTGTTTTGCTTGTTTGCTTTAAGATAACAGCTCACTCTGGAGCTGAGCTTGTTCAGATGGTTCAGTATGGTTCAATAAACTTAACAAAAATAATCAATTAAACTAAAGAATTTTGGATTAAAATCTGCATCCAATATTGCTTACTCACCACTCAAAAATATTTTCATCTTAAACCTCAAAGTTTATGCTAGTAATACACAAAATTATACTTTGAAAGGCTTTGCAGATAAAGAGCAAAAATAAGTGTTTCTAAAGTTTTATAATACATCATTGTTCTATGTGTTTTATAATTTATCCTTTCTAATGTGTCATCTGTGCTTCCCACTGACTTTTACAGCTTTTTCTGAGAACTGCTACTTTTTTTTTTTTTTTAGTGTTACGTAAGCTGCTGACGATGCTTAGGTGTATTGACACATTCATACTCGTCTGCCCCTCCCCCTTTGCTCTCACTGTTTCTCATGCCTTTACCTGAGAAATCAGACACACCCAGCATCTTCAACCCCACCAATCACAGCACAGAAGAGAGACGCCCAGACTGTCCACTGTTTCCTGTTTCTGTGAGGCAGAAGCATGCAGTGCCAGAGAGGGTGAGCTTCACTTTGTCTGGAAAGCAAAGAGAAAGAAGGGGAGAGACGGAGAAGCGTCCCCCAAGACACTTCTCAGGTGCACTAGACAGTTTGTGTCAGTCAAGAGCAAACCGTGACCAGCTAATCAGCAAAGGTGACCTACGTGAAGAGACTTGGAAACACCAAAAGATGGACAAACCAAGCGAAAGAGAAGGAGAAGTGGAGCCAGATGCCTATCATTGGACTAGGGAGAGGGAGAAATTTCCTGCAACCAGAAGAAGAGATGGAGAGATGGACTTGAGAGAAAGAGGAAGGCGGAGAGATGGTGATCGACGTGCAAATGGAAAGTCATCAGTGTCAGAGCAGGCTGAATATGGAGGCCGAGACAATGAGAGGAGAAAAGGAGGCACTTTTCCAAGAATGACAAAACCAAGCAGAGAGAAAGATGGAAGGATACTACATTCAGACTATAATAGGGAGCATCACATAGGAAGACAGATGGACATTCTATATGAAAATGAAAGAGAAAGGGAAAGAAGGAGATACAGAGAAATGGACACACTGAGTGAAAGAGAAAGCACAAGATACAGGGAGGAGTTGAAGAGAAATGAAATGAGAAGGCTCGTAAAGGAGGAGCCAGAAAGACGGAGGGAACGAAATAAGGAGTTTGATTCTGAAATGAGAGAAAGAAGGAGAGAAAGTTATCCAGGGGATAATGACCTTTCAGGCATGAGGGAAAGAGAGACATACAGAGAGAGAGACAAACTTAGACAAAGAGACAAGGAAGACAGTAAAATGGAGAAGAGTGGACAAAGTAGTGGAGAGCTGATTTCAGGAAGTGATATCGAAAATAAACAAGGGAGGGCAATGAGAGAGAACCCCGAGGACAGAGAACGAGAAAACACTTCTGAGATTGATAAAGAGAAACTAACGGGAAGAACAGAGGAAGAGCAGGAAGTAAAGAGTGCTCTGAGGGACGAAGAGGGGGGTGAACGCTTTGCTGCTGAGGAGGCAGTTACAAAGAAACCTAGGATAAGGAAAATGTGGCTGGAACCTCGAAGTGAGAGAAAAGAATCCCATTTAGAAGAAGAGTACACACAGAGGGAGAGAGAAAAAGAGAAGTACATCCAAAGATATAAAGAAATCAAGACAACTGGACATGAAGAAGAACCCGAGAGAAAGAAAGAAAACAGGAAAAAGAGTCTTGAGGACAAGTATAGAGAACTTGAAATGGCTGGGGAGTTCGTGAGGGATGTCGAGGTAGAACAAGAGGAGAAATGCATGGAAGGGAATGTGATTTGTGACAGAGAAGCCCTGGAAACAGAGTGGCAGATAGAAAGGGAAAATGTTCCTGATAACATGGAAGAGGAAGAACAGAGAAAGAACAATAGATACGACTATGTGGGGAATGAGGAAGGAAGTGAGGGAGAATCGGAAGCAGAGAAAGGCAGAATGATGTCAGCAGATGATGGATTTGTGACTGTCTCCAGTGGAGGGGATGATGCTGAGGAAGAGGATTTTGAAGACTGCAAAGAATTCTGGGATGGTGGAGTTGCTGATGATGTCTCTGGAAACTCAGGAGCTACTCAGGGCAGAGAGATCGGGACAGATGAAGAACTGGAAAACCAAACAGCGAATAAGAGAGCAGATCGTAGGGCTCCAAAAGGACCCCCAAAAGTTTTTTGTGTGATTTCTCAGACCCTTCCCAAGTCCCTAACTAAACAGAATGCGTATGAAGATACTACTGTTGAAGAAGCAGGCAATCAGCATTCAAGTCAAAATATGGACAACCAAGGTGAAATGAGCACTGCTAATGCATTTGTAGAGATTGAACACAGTGAACAAGACATTGAAAGTGCGATGGATGACCTCACTCTTTCTCCTAATGAGGACAAAGGGGAGGGAACAGGAATTGATGACCAGGCAAAAGAGGGTGTAACATCACTGGAAGGCCAAATGATTCTTTCCAATGAGGAATCAGAACAAGACACCCAACTCTTCCCAACACAGCCTTCTGAAACTTTATGGCCATGTCATGAGACTCATAATGAAGACACATTACAACTAGGAGAAAAAGAAGTTACTGGAGAAACAGTTAAATATTTTGATTCAGATGACACATGGAGTACATCCGAAGAACGAAAGCGAAGCTCTACTGCTCCTCATCTTCGATGGGCCAAGAACGTGGTGAAAGAGATCCTGGGTCTGAAGTTGGGGGACACAGAAAATACAAGAGACTCTCAGTTGTATCAGGAATACAATGAGGTGGCCCAGAACAGAGAGATCCTGCTGTCTCATACCGATTCTATATCATTAAGTGGCGATAATCTCTCTATCCGTTCATCTTCTTCCCCAAATCATTCCCCTAAGCTATCACACAGACCCCTCCCACCTCTCCCTCAAGTCCTCCTGCACCCCCACACTCTGTCCCAAACCAACTCCTTTAAAAGTCTTAATGTGCCTCAGCAATCCATAGGCAGACCCCCTTCCCCTCGCGTGCCCATCTCTGCTTCCTCACCCACACTGTGGCAGGAGCTCCCGGGAGTGAGGAAGAGCTCAGATTTTGAGATACTCACTGAAGATGAGAGACGTCTGCAGGAGGTGAGGTTTGAGGTCGTGACCTCTGAGGCATCATACTGCCGCAGTTTGGACATCGTAGTGGAGAACTTTGTCATGTCCAAACCGCTCAACGTTATCCTGTCTTCACAAGACAAAAACTGGCTGTTCTCCAGGCTAATTGATGTTAGAGCCACCAGTCACAGTTTTCTGTCTCAACTGGAAGAAACAGTGGAGAAGGACATAATGCACTTTACCGTCTGCGACATTATTATCAAACACTGTCCACGATTCCGAAAGGTCTATGTGCCATACCTTACCAACCAATCATATCAGGACAAGACGTATCAAAGATTAATGGATGAGAGTCACGAATTCCGTAGAGTTGTGGAAAAGTTAGAGCGTAACCCGGTTTGTCAACGACTGCCTTTACGGTCTTTCCTCATTCTGCCGTTCCAAAGAATCACTCGCCTCAAACTGCTAGTGCAGAATATTGTAAAGAGAACCGCTTCAAAGACCAAGGATGAAGCACAGGCCATAAAGGCCATGAAACTACTTGAGAAGATGATCCAGGAGAGTAATGAAAGTATCTCTCAAATGAAGAACATTGAGTCACTTGTGACTCTCAATGCCAAAGTTGACTTTGAGTGTAGGACTCTTCCGTTGATCAGTCAGTCCCGCAGACTGGTACGAGAGGGATCTGTGACTGAACTGAGAGACTTTTCCCTGAAAGACAGGGAAGATGAGAGAAACGCTTATATGCACCTTTTTAATGACTATCTCCTGCTCTCTTTGCGGAAAGAAGGGGGTAGGTTTACAGTTATCGATCATGCTCCAGTGTCAGAGCTGCGGGTTGAGAACTGCAGGTTCAAACTGCATTCCTTACAGAAAAACCTGTTCCGTCTGCACATGTCGCAAAAAGCCCTGCTTTTGAAGACAGATACAGAAGCTGATAAACTACGTTGGATATCAGCACTCTCACGTCCTTATCCTGAGATTGACTTCAGCGCAGTTCAGGACTTTGCACAAATGCAGTGCATCAGAGCCTTTGTTGCCCAGCAACCAGATGAACTCAGTTTAGAGAAAGCTGACGTTCTATTAGTTCACCAGCAGAGTAGTGATGGCTGGGTGGAAGGAACTCGTCTGTCAGACAGGCAACGAGGCTGGGCCCCTGAGGCTCACCTGGAGACAATAGTCAGCGACAAAACAAGAAAGCGCAACCTTCTGGACACCATGAGAATTGCTACAGCTGCAATGTGAATTAATATGTACATCCTACATGGTTCTCAGGTGGACATTTTCAACCACAATTTTTTAGTGTTACTTTAAAGTCTTATCCAAAAAGACCTTCAAGAACTTGGATTTATGTGGGAAGTTTCTATTTATTTTGTGTAGATACTCGAGCTGATAAGGGTGATGTGGGCGATATGGTCACACCCATGTCATGGTACTCCACACCCTGAGAAAGGGTCTGGAAAGATGCTGAATTGCACCAACAGAGCTCTTTGGATATCTCATGATTTTGTGCAAATGGTGCAATCAAATGAGTATCTATGCAGCTTCCACAGTGTTTATGTAAACATCATGTAAAGTCTTTATTATAACTTGGAAGTTGGGTGTCACTCCTGGACAGACAATTGGACCACAGTCTGTTTTCCTCTTAATGAGCGAGTTATCTCACTGAGGAGCAACTACAGCTGGATATAAAACAATGGAATCAGTGAGAAATTCTGAATACTGCACACCTGCAATTTATAAACATTACATCCCTTTCAACATGGAATATACATTCTGACTGCAGCCTCAAATACGATTTAAAGAGGATACTGTCGTGCTCCAGGACAAAGATGCAAAAAGGACAAATGGTGAACTTTTCCTTAAACAAATTGTGCTAATTTTATTCAGGATCATGAATTATAGATGGCTAATTTTTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09138227_09156795.mRNA True 5394 mRNA 0.43 15 9137434 9157472

Neighbor

gene id symbol gene type direction distance location
CI01000016_09026732_09050431 NA coding upstream 86596 9026732 ~ 9050838 (+)
CI01000016_08916022_08916606 NA coding upstream 220767 8915028 ~ 8916667 (+)
CI01000016_08817749_08824067 NA coding upstream 313356 8817749 ~ 8824078 (+)
CI01000016_08766170_08768621 LAG3 coding upstream 368656 8766170 ~ 8768778 (+)
CI01000016_08752386_08753821 RPL18.L, RPL18.S, RPL18 coding upstream 383613 8752386 ~ 8753821 (+)
CI01000016_09181426_09182326 NA coding downstream 23954 9181426 ~ 9182326 (+)
CI01000016_09183871_09184200 TMEM238 coding downstream 25904 9183376 ~ 9184427 (+)
CI01000016_09228083_09231481 NA coding downstream 70611 9228083 ~ 9231635 (+)
CI01000016_09240403_09243601 NA coding downstream 82273 9239745 ~ 9243601 (+)
CI01000016_09259876_09260073 NA coding downstream 102169 9259641 ~ 9260201 (+)
G98385 NA non-coding upstream 11503 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 39331 9085228 ~ 9098103 (+)
G98362 NA non-coding upstream 147973 8989238 ~ 8989461 (+)
G98356 NA non-coding upstream 158894 8978232 ~ 8978540 (+)
G98289 NA non-coding upstream 191979 8943217 ~ 8945455 (+)
G98391 NA non-coding downstream 17727 9175199 ~ 9175960 (+)
G98392 NA non-coding downstream 53878 9211350 ~ 9211766 (+)
G98280 NA non-coding downstream 66977 9224449 ~ 9226908 (+)
G98290 NA non-coding downstream 168902 9326374 ~ 9375553 (+)
G98271 NA non-coding downstream 218745 9376217 ~ 9378050 (+)
G98288 NA other upstream 134717 8996098 ~ 9002717 (+)
G97824 NA other upstream 1121659 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1351711 7783987 ~ 7784996 (+)
G96389 NA other upstream 1976144 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3729571 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 638159 9795950 ~ 9842576 (+)
G99041 NA other downstream 766946 9924418 ~ 9925654 (+)
G99410 NA other downstream 1076928 10234400 ~ 10236851 (+)
G99456 NA other downstream 1136919 10294391 ~ 10298904 (+)
G99940 NA other downstream 2514173 11671645 ~ 11672873 (+)

Expression


Co-expression Network