CI01000016_09183871_09184200 (TMEM238)


Basic Information

Item Value
gene id CI01000016_09183871_09184200
gene name TMEM238
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9183376 ~ 9184427 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09183871_09184200.mRNA
GTATAAAATGCTAGCGCTTGAGGGCGAGCTTATCACGTGACATCGAAAATATTTTGGAGCGCAGACGGAAAAACCCGGAAAAACAAAATATTTATCATCTAAATGAAAGTCTTTCTTGTCAGTTTTGCAAACTATCATAATTTTTGTGATAAAAGGTAAGTATAATGACAATTGTTCAGTATATAGCCTACTGGGTTTTATTATTTTTTATATATAGATATATATAGCCTATTTTGAAAAGCAGTGCTCGATTATTTACGCCTGGTTCAACAGGTGCAGCGGGTTTTTTCCCCAAGCATTTCTTCTGAATAAAACATCTTGTCTTATAAGCTATAGTACCTTAATGTGCTTTACTTTACATTAAGATAGCCTGTATTGATGTAAAATAAAATATATTGGTTATAACCTTGTTCCTACTAGAACAGTAATACGTTTTCCATCTTTTTTTTTTTTTTTCCATTTCTGATATACTCGTCATGTCAGAGGGACGTCATGATGTCTGGTGCTGACCGTGTTGGACTGACCCACTGTAAGTTTGTGCTGGTGTTTGCAGTCCTCATGGATCTTTTCGGTGTGTCCACCCTCTTGATCGGCGTCTTCGTCCCTCTTGAAATCGGCGGTCGTGACTTTGGTGATCTGTTGGTGTATTCTGGAGCTCTGCTGGTGTTGATGTCTATGGGTGCCTGGATCATGTGGTACAGTGGGAACATTGATGGTTTAATATCAGGAAAGGATCTGACACACAAACGCAATGCTGTGGACCGGCTCGCTCGCACCCTCAGTCGCCGCATACGGAGACCTCAACGCAGCCACAGCACATCCTGACCTCTGGGCATGACAGAGAGCACATACACAGGGCTGCTGGGATACCACACACATGAGCCTAAAATCTAATTCGGAAGAGCAGGAAAATAGCGTTTTACAAGTATGAAGGTTGACAGATGTGTTACAATGTGGTGTTTGCAACTACTGCTACCACAAAACAAGTATGAAATTGCAGTTATTTTGTAGAACCTGTACTGTAGTGCACTATGTACAACTCACAAAATGTA

Function

symbol description
tmem238 Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09183871_09184200.mRNA True 1052 mRNA 0.41 1 9183376 9184427

Neighbor

gene id symbol gene type direction distance location
CI01000016_09181426_09182326 NA coding upstream 1050 9181426 ~ 9182326 (+)
CI01000016_09138227_09156795 NA coding upstream 25904 9137434 ~ 9157472 (+)
CI01000016_09026732_09050431 NA coding upstream 132538 9026732 ~ 9050838 (+)
CI01000016_08916022_08916606 NA coding upstream 266709 8915028 ~ 8916667 (+)
CI01000016_08817749_08824067 NA coding upstream 359298 8817749 ~ 8824078 (+)
CI01000016_09228083_09231481 NA coding downstream 43656 9228083 ~ 9231635 (+)
CI01000016_09240403_09243601 NA coding downstream 55318 9239745 ~ 9243601 (+)
CI01000016_09259876_09260073 NA coding downstream 75214 9259641 ~ 9260201 (+)
CI01000016_09266373_09278553 NA coding downstream 81138 9265565 ~ 9279131 (+)
CI01000016_09299769_09306497 RORC coding downstream 115342 9299769 ~ 9307385 (+)
G98391 NA non-coding upstream 7416 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 57445 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 85273 9085228 ~ 9098103 (+)
G98362 NA non-coding upstream 193915 8989238 ~ 8989461 (+)
G98356 NA non-coding upstream 204836 8978232 ~ 8978540 (+)
G98392 NA non-coding downstream 26923 9211350 ~ 9211766 (+)
G98280 NA non-coding downstream 40022 9224449 ~ 9226908 (+)
G98290 NA non-coding downstream 141947 9326374 ~ 9375553 (+)
G98271 NA non-coding downstream 191790 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 215528 9399955 ~ 9402046 (+)
G98288 NA other upstream 180659 8996098 ~ 9002717 (+)
G97824 NA other upstream 1167601 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1397653 7783987 ~ 7784996 (+)
G96389 NA other upstream 2022086 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3775513 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 611204 9795950 ~ 9842576 (+)
G99041 NA other downstream 739991 9924418 ~ 9925654 (+)
G99410 NA other downstream 1049973 10234400 ~ 10236851 (+)
G99456 NA other downstream 1109964 10294391 ~ 10298904 (+)
G99940 NA other downstream 2487218 11671645 ~ 11672873 (+)

Expression


Co-expression Network