XLOC_007932 (pfdn6)


Basic Information

Item Value
gene id XLOC_007932
gene name pfdn6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30550397 ~ 30557637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015478
CCATGGTTCATTCTCGTAATAGATGAATATAGCACATGATACTATTTTACCCTACATATGTTTAAAACGCTGCTTAAGGTGCAGATTTAGAACAGTCATTACATTTGCTTgtgttatagaaaaaatatataactgaCTTTACCTGCTGTTGTGATTCTATGTGGTCGCGCACACCCGAAAAAAGACCTTCACGTTAGAATTTGAACCATGCGCGCTGCCATATTGCCTTGACTGTCACTACAGAGGGCTTGGAGGAAGAGGATAGACTGACACCACATGGACAGGAGAGGCACTACGCTTTTAGATACTGGAAAAATTGTACCCATCGTATTAATCCAAAAATCACATTAACTGATGCGTTAAATCTACATATGGTGCGTAAAATTATAGAGCAAATTATTTAAAGGTGTGTGAATAAAcataatactgaaaaaaattgtGTATGTTTTTCTTAAACACTAGATGGCGAAGTAACTCTTTTTATCAGCTATCGTAAAACCCCCATGTGACGCAATGATATGACGTCATTTCCCGTGCGCCTCAGACTGTGTGCTTGAGTAGTGTGCTGCTGACTGTCTGCATTTGTCATAAAATAtcgtgatttttattatttagcaatAATAATAAGTCAGACATTGGAATAGCAGGTGTGATGGCTGAAGCGATTCAGAAGAAATTGCAAGCTGAGTTGGAGAAATATCAACAACTCCAGAAAGATGTCAGTAAAAGTATGTCAGCAAGACAGAAACTGGAGGCACagttgactgaaaataacattgtaaAGGAGGAGCTTGCCTTACTGGATAGCCAAAACACAGTTTACAAACTAATTGGACCGGTTCTGGTCAAGCAAGATCTAGATGAAGCCAAGGCCACAGTGGGAAAGAGATTGGAATACATCAATGGTGAAATTCAGCGCTATGAGACTTTATTGAAGGAGATGGAGAGGAAGTCTGAGCAGCATCGGGAGGTTTTGTCCAGTCTCCAGCAGGAGTACCAGCGGGCTCAGGGAGCTTGCCTTGCTGGATAGCCAAAACACAGTTTACAAACTAATTGGACCAGTTCTGGTCAAGCAAGATCTAGATGAAGCCAAGGCCACAGTGGGAAAGACATTGGAATGCATCAATGAAgtaatctatcag
>TCONS_00015479
GCAATGATATGACGTCATTTCCCGTGCGCCTCAGACTGTGTGCTTGAGTAGTGTGCTGCTGACTGTCTGCATTTGTCATAAAATAtcgtgatttttattatttagcaatAATAATAAGTCAGACATTGGAATAGCAGGTGTGATGGCTGAAGCGATTCAGAAGAAATTGCAAGCTGAGTTGGAGAAATATCAACAACTCCAGAAAGATGTCAGTAAAAGTATGTCAGCAAGACAGAAACTGGAGGCACagttgactgaaaataacattgtaaAGGAGGAGCTTGCCTTACTGGATAGCCAAAACACAGTTTACAAACTAATTGGACCGGTTCTGGTCAAGCAAGATCTAGATGAAGCCAAGGCCACAGTGGGAAAGAGATTGGAATACATCAATGGTGAAATTCAGCGCTATGAGACTTTATTGAAGGAGATGGAGAGGAAGTCTGAGCAGCATCGGGAGGTTTTGTCCAGTCTCCAGCAGGAGTACCAGCGGGCTCAGGGTCAGGCTGTTGCCAAGGCCTAGATGGACCATAATTCTGTTTGGGACACTGGTCTTTTCCAGCGGAactcagagactgattgcacctGCTAAAAACACATGCTTCTTCACATGTCTATTACAGTTCTGtaggctttttttgtttgtttgatgctatTAGGCTATCAATAAatcttgattattta

Function

symbol description
pfdn6 Predicted to enable chaperone binding activity. Predicted to be involved in chaperone-mediated protein complex assembly and protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN6 (prefoldin subunit 6).

GO:

id name namespace
GO:0051131 chaperone-mediated protein complex assembly biological_process
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051082 unfolded protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040426-1589 Predicted to enable chaperone binding activity. Predicted to be involved in chaperone-mediated protein complex assembly and protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN6 (prefoldin subunit 6).

Ensembl:

ensembl_id ENSDARG00000037108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015478 False 1142 mRNA 0.40 5 30550397 30557637
TCONS_00015479 True 684 mRNA 0.42 4 30551321 30557127

Neighbor

gene id symbol gene type direction distance location
XLOC_007931 her11 coding downstream 9430 30538482 ~ 30540967 (-)
XLOC_007930 FP015860.1 coding downstream 13513 30511481 ~ 30536884 (-)
XLOC_007929 micu3b coding downstream 59634 30453342 ~ 30490763 (-)
XLOC_007928 zdhhc2 coding downstream 98179 30426956 ~ 30452218 (-)
XLOC_007927 slc7a2 coding downstream 160252 30367602 ~ 30390145 (-)
XLOC_007933 tmem265 coding upstream 23044 30580681 ~ 30587861 (-)
XLOC_007934 npas4a coding upstream 79318 30636955 ~ 30642819 (-)
XLOC_007935 efemp2a coding upstream 112025 30669662 ~ 30704075 (-)
XLOC_007936 fibpa coding upstream 156099 30713736 ~ 30724165 (-)
XLOC_007937 fosl1a coding upstream 181839 30739476 ~ 30747686 (-)
XLOC_007641 CU855896.1 misc downstream 28142557 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 28142966 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 28143325 2406945 ~ 2407072 (-)
XLOC_007925 NA non-coding downstream 252226 30297374 ~ 30298171 (-)
XLOC_007920 NA non-coding downstream 843354 29706704 ~ 29707043 (-)
XLOC_007919 NA non-coding downstream 848763 29701320 ~ 29701634 (-)
XLOC_007918 CABZ01048945.1 non-coding downstream 1197274 29353007 ~ 29353123 (-)
XLOC_007951 BX248522.1 non-coding upstream 768964 31326601 ~ 31326717 (-)
XLOC_007952 NA non-coding upstream 908969 31466606 ~ 31469460 (-)
XLOC_007954 dre-mir-457b non-coding upstream 964293 31521930 ~ 31522007 (-)
XLOC_007957 BX511227.4 non-coding upstream 1075509 31633146 ~ 31635433 (-)
XLOC_007960 AL929434.1 non-coding upstream 1301793 31859430 ~ 31859506 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G6805 NA non-coding CI01000000 null 10226692 ~ 10228736 (+)
bowfin (Amia calva) G6136 NA non-coding CM030121.1 CM030121.1 36269114 ~ 36270818 (-)