CI01000016_09228083_09231481


Basic Information

Item Value
gene id CI01000016_09228083_09231481
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9228083 ~ 9231635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09228083_09231481.mRNA
ATGATGGACAAAATAATTTTAACATCTGCCGAGCCAAGCCTTCACAGTAGAGTATTGAATCCTCAACGACCCAGGATGAGAGGCATAACGGCAATGGTTTTCCTGGCCTTATGTGCGCTGCTGATTATAGTCTACCAGGCCGTACAGCAGGAGCTCAACATTCGCAACCTGAAAACACGCATCGTTGTTTCTGGTGAACAGGTGAAGTTGAAGGAGGATGGAATCATGGCAACTAAGACGAAAGTGGAGGAGATCAATAAAAAGCTTAGTGCTCTGACCACACAGAGGGATCAGCTCAAAAAACAGAAGGATGACATTAAGAAAGGCACTGCTGAATCTGAAAAGGAACTCAGCACCTGCAATGCTGAGAAGGGTACATTAGAGAAGAAGAGCAATGAAGCAAAAGACGCACTTAAGAAACTAAAGGAAGACCAAGAAGCTGAAAAGAAGAAAGCTGAGGAGGAGATTCAGGGTCTGAAACAAAGCATTCTAGAGAGAGATGTAAAGATCTGCAAATTTGTGGATGTAGCCGTGGAAGAGGCAAAGAAGTTGTGCGCAGTTGCCCTGTGAAGGGATTTCAGAAGTCTAATGGAGTTCTCTCAGGAAAAATGTTTTGGATGGGATTGTGTATATTTGTTTCTACAAACCCTTTTTGACTTTGTTATATGTTACATATGTTTCATAAAAAAGGTATGGATGTGCTGCTTTATGAACAATGCACTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09228083_09231481.mRNA True 724 mRNA 0.42 5 9228083 9231635

Neighbor

gene id symbol gene type direction distance location
CI01000016_09183871_09184200 TMEM238 coding upstream 43656 9183376 ~ 9184427 (+)
CI01000016_09181426_09182326 NA coding upstream 45757 9181426 ~ 9182326 (+)
CI01000016_09138227_09156795 NA coding upstream 70611 9137434 ~ 9157472 (+)
CI01000016_09026732_09050431 NA coding upstream 177245 9026732 ~ 9050838 (+)
CI01000016_08916022_08916606 NA coding upstream 311416 8915028 ~ 8916667 (+)
CI01000016_09240403_09243601 NA coding downstream 8110 9239745 ~ 9243601 (+)
CI01000016_09259876_09260073 NA coding downstream 28006 9259641 ~ 9260201 (+)
CI01000016_09266373_09278553 NA coding downstream 33930 9265565 ~ 9279131 (+)
CI01000016_09299769_09306497 RORC coding downstream 68134 9299769 ~ 9307385 (+)
CI01000016_09317824_09332379 NA coding downstream 86087 9317722 ~ 9332714 (+)
G98280 NA non-coding upstream 1175 9224449 ~ 9226908 (+)
G98392 NA non-coding upstream 16317 9211350 ~ 9211766 (+)
G98391 NA non-coding upstream 52123 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 102152 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 129980 9085228 ~ 9098103 (+)
G98290 NA non-coding downstream 94739 9326374 ~ 9375553 (+)
G98271 NA non-coding downstream 144582 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 168320 9399955 ~ 9402046 (+)
G98414 NA non-coding downstream 172232 9403867 ~ 9404218 (+)
G98415 NA non-coding downstream 172732 9404367 ~ 9404679 (+)
G98288 NA other upstream 225366 8996098 ~ 9002717 (+)
G97824 NA other upstream 1212308 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1442360 7783987 ~ 7784996 (+)
G96389 NA other upstream 2066793 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3820220 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 563996 9795950 ~ 9842576 (+)
G99041 NA other downstream 692783 9924418 ~ 9925654 (+)
G99410 NA other downstream 1002765 10234400 ~ 10236851 (+)
G99456 NA other downstream 1062756 10294391 ~ 10298904 (+)
G99940 NA other downstream 2440010 11671645 ~ 11672873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location