CI01000016_09266373_09278553


Basic Information

Item Value
gene id CI01000016_09266373_09278553
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9265565 ~ 9279131 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09266373_09278553.mRNA
TTATAAAAGTACAAATATATTTGAAACATCTGAGATGTTTTGAAGAGTTATTAAAATATTTAAAGATTATTGTTTGATCCAGTTTATGTAGGCTAGTTTGGTACCTAGAATATAAACTAACCAGAACAGAATTTCTGTTAGCAAAAAAGTGTCTTGTCGTGTGGTGTGATTTTATTGTAGCTTTAAACGATGAACACAAAATTAAAGTGGACCGGACAAAAATGCTCATAAACTACTCTTCAGTCTCCCATTAAAAGCATTCCCCTCGCTCTTCCCGCGCCTATTACATAATGATTGATGACATAACACCGTACTGGCTCGGGACAGCTCGAGCGCTGCGCGAGCCTGGACAGACAGAGGGATCGCGCGCGCCAGCGGCCACTCGGTCGATTATTTATCCAACAAGTGCCCGTCAGTTTCTCTCTTTCTCTCTCTCAGCGGGACCGGTCAACTTTATTTTTGAAATGTCATTTACGCTTGTTAGTTATATTAACACAACAGCGAAGCGAAAGAGGAACGTTTTGACTTAAACCTCGTTTATTGACCAGACGCGCCAACTTTTAGGGAATTATTAAAAATGGCGATGTGCTTGTTAAAACGTTTGCGGCGTCCCGGTCGTTAAAGTGTCAGCAGTTTTTTTCTTTTCCTCTAGTTTTTATTACTTCAGGTGGATTTTTAGGTTTTTTTTTTTTTTTTTTTTTAATGTAATTTAATAATAATAGGCCTAATAATAAACACTAATCACAACTAAACTATAAGGTAAAGAGGTGTGTTGGCACGGAGAGTTTTGACAGGAAGGTAATGGAAAATGATGAGCCCGAATCGCCGGACCCGAACCACGACAACACTCAGGGTAAAAGAGCGGTGTGGTCAAGTAACTGTTCAAGTTGGCCAAAATGGAGTGATAAGCAGTGTAATCGGGGCTTGGCTGTGTTATCCAACTGCATTTAGATCTGTTACTAAGGTGCCTTATATCACCCTGATGATTCAGACAGACACACTGCTAAAAATACCCATCGGAAACGGCCAACACAGCATCAAATCTGAACTTTCTCAAAGTGTGGTCAAACGTCAGACAACGGAGATTGCTGTTTGTGCTCATGTGTGGGCAGGGATGGGGGTTGAGGGGCCTTTTCATGTGAAAGATTATGTTTGTTTGTGCTTTTTACTCCAATAAAAGCATACTTTTGTGTTTGTGTGCATGTGTTGGTGTATACATGCATGTGTTTTAGAGTTTTAGTTGTTTAGTGTGTGTAGGTGTGTGAATAACACTGTACTTTCCATGAATAGGGGCCTAGGACTTAATACTCCTTAAAAATGTTGTTTGTTTTTCAACAAATATTTAGTGAAAAGATGTTGATTCACTTCTTTAACTTAAAACTAAAAATTAAATAAACTAAATACATCTGTTTCATTTTCTATACATTTTCATCCAAGAATTCAATTTTTGCAATCCTGTTAATACATATAATAAAGTTGAAAACTCTGATTTGTATGATTTGTTATTTTCTAGCAATAAACATTACATAAACACAAAAAATAAAGAAAATTTATACTAAAAAAATTACTTAAATTAAATTAAGGAAAATACACCAGAATGGGTATTTTTACTTGTTTGTGATTAAATGTAGGTTTGTAGTTATTGATAATTTTTATTTTGTTTAAATTAAGGAAAAATATTTGATCATTTTTCTTTCAAAAACTTAATTTAAAGGCTGAGCTTGACAAATGCAACGACTTAAGGACACATTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09266373_09278553.mRNA True 1755 mRNA 0.36 3 9265565 9279131

Neighbor

gene id symbol gene type direction distance location
CI01000016_09259876_09260073 NA coding upstream 5364 9259641 ~ 9260201 (+)
CI01000016_09240403_09243601 NA coding upstream 21964 9239745 ~ 9243601 (+)
CI01000016_09228083_09231481 NA coding upstream 33930 9228083 ~ 9231635 (+)
CI01000016_09183871_09184200 TMEM238 coding upstream 81138 9183376 ~ 9184427 (+)
CI01000016_09181426_09182326 NA coding upstream 83239 9181426 ~ 9182326 (+)
CI01000016_09299769_09306497 RORC coding downstream 20638 9299769 ~ 9307385 (+)
CI01000016_09317824_09332379 NA coding downstream 38591 9317722 ~ 9332714 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding downstream 61363 9340494 ~ 9349036 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding downstream 78486 9357617 ~ 9361063 (+)
CI01000016_09363759_09363932 NA coding downstream 84628 9363759 ~ 9364373 (+)
G98280 NA non-coding upstream 38657 9224449 ~ 9226908 (+)
G98392 NA non-coding upstream 53799 9211350 ~ 9211766 (+)
G98391 NA non-coding upstream 89605 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 139634 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 167462 9085228 ~ 9098103 (+)
G98290 NA non-coding downstream 47243 9326374 ~ 9375553 (+)
G98271 NA non-coding downstream 97086 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 120824 9399955 ~ 9402046 (+)
G98414 NA non-coding downstream 124736 9403867 ~ 9404218 (+)
G98415 NA non-coding downstream 125236 9404367 ~ 9404679 (+)
G98288 NA other upstream 262848 8996098 ~ 9002717 (+)
G97824 NA other upstream 1249790 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1479842 7783987 ~ 7784996 (+)
G96389 NA other upstream 2104275 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3857702 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 516500 9795950 ~ 9842576 (+)
G99041 NA other downstream 645287 9924418 ~ 9925654 (+)
G99410 NA other downstream 955269 10234400 ~ 10236851 (+)
G99456 NA other downstream 1015260 10294391 ~ 10298904 (+)
G99940 NA other downstream 2392514 11671645 ~ 11672873 (+)

Expression


Co-expression Network