CI01000016_09299769_09306497 (RORC)


Basic Information

Item Value
gene id CI01000016_09299769_09306497
gene name RORC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9299769 ~ 9307385 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09299769_09306497.mRNA
CTCAGATTGAGGTGATTCCATGTAAGATCTGTGGAGATAAGTCTTCAGGGGTTCATTATGGAGTTATCACTTGTGAGGGCTGCAAGGGCTTTTTCCGCAGAAGTCAGTCCTCCAGCGTGCAGTACTCGTGCTCCAGACAGAGCAACTGCCCCATCGACCGCGCCAGCCGTAACCGCTGCCAGAGCTGCCGCCTCAAAAAATGTGTCGCCCAGGGGATGAGCCGCGATGCTGTGAAGTTTGGCCGCATGTCCAAGCGTCAGAGAGACTCGCTGTTTGCAGAAGTTGAGAGACATCGACAACAGCAGCGTCTTCAGGCCAACTCAGTCCAAGAGCCTCAGTCTCTCCCAGCCTACCGATCCAGCAAAGAGCCCAGAGAACAGTCATCACATCTCATCCCGCCTCTACCTCCAGCCTACCCTTATTCTGTAGAGCCTGAACTGCCAGGCTGCCCACCGGAGGTGCATCCATACCTGGAGTGCCGCATAGGCGAGGCCCAGGCTCAGAGTCTGGCCTACAGGAGCTCCCACAGGAGAGGTGAGAGCAACAGCTTGTCAGCTGGTAGAGGATTTGATTCTACACGGTCTACACCAGAGGCTATTCTGAATATGAACGGCAGTGAAATGGGGTTTCGTCCTTTTGACCCTGAGAGCTCGTTCTTTTCCTATCCGACCTCTTTGCACATAGAGGAGATCTCGGCAAGTATCGTTCGTTCTCACAGAGAGACAACTCAGTATCGACCGGAGGAACTGCAGGCTCTCAGATGGAAGGTTTTCAGCAGGGAGGAGATCCACATTTACCAGAGCAAATCGGTGGATGAGATGTGGCAGCACTGTGCGGTGCGGTTGACCGATGCCGTTCAGTATGTGGTGGAATTTGCTAAACGTATCCCAGGATTCCGTCAGCTTTGTCAGAATGATCAAATTGCTCTCCTCAAGAGTGGGTCCATGGAAGTTGTTCTGGTCCGGATGAGTCGGATGTTTAACACAGAAAACAACACAGTATTTTTTGACGGCAAATTTGCAGGAACAGAACTTTTCAAATCTCTCGCATGTAGCGATCTAATAGCGGCTGTATTTGACTTTGCTCACAATCTGTGTGCGCTGAGACTGACTGAACAGCAGATGGCGGTGTTCACTGCACTGGTCCTCATCAATGCAGATCGACCATGTCTGGAAGACAGAGAAAGAGTGCAGAAAGTAAGGAGAGATGTGGAGCTTGCTCTTAGTCACATCCTGCACAGAGACAATCAGGAGAGTCTACTGCATAAGCTGTATCAAAGAGTGCCGGTGCTGAAGTCTCTGTGTGCACTGCATATTGAGAAACTGCGATGGTTTCGGCAGCTTTACCCTCTCACGGTGCATTCCCTCTTCCCTCCACTATACAAAGAGCTGTTCGGCTCTGACACGGATATACAGACATTGACTACTCACTAAACACACACAGACACACATTTCATTTGCAGATGCAGAAATGAAACGACATCGCACACATTACGCACACACAAAGTTACATATAAAAGTGTATGCAATCAAGATCTAAATATATTATTTACCTGCTCAAGAAGTTAAATATATTTTTGTAACTCTCAGAACAGAAAATAATTTTAAGAGAAGTATGCAGTATTTTGTGCGAATTCTACTCTGTAGGCCGAAGCAAAATATTACTGAGGATATATTTTAATGTTTTTGAAGTTTTTGATGACCTCGATGGTCTTGAATTCTAGCTGGTACAAAGGTGCATTAGATCTGATCATTAGAATGTTATTTTTTTATAGAGATTTTACCAGCAAATACCAGATTACAAATGATAATATTTGCAGATCTCAAAGCAACATGTTGCAACATGTTCTTTGTCAACATACTTTCCATGAGCTGACTGATGTTTGAACTGGCGGCATCAGACATTGGATGATTTTCAAGCTTCATTTACAACATTAGAATCCCTTTTTATTTCTCAGGCAGTACAGAGACATGGATGCTTAATGATTTCTGCCTCTTATAATATAGCCTATTACATTATTGCATTAATTTAAACACGATGATCTATTATGCGTCACCTTTTTTTTTGTACTTCCCTTCTGTTAAAGCTTGTCTTAGTGCTTGTAATGCTCATCTTTCATTCATTTCACATGGATTTGAGTAGAAATTGTTGATTTTGTTCTTGAACTCACCATTCCATTCAAATAGACCATCTTAAGTTTATTCAGTCTTTGGTCATAGATGATTTTCTCTGTTTTTCAGTCAGCTGAATAATTATTGTACTTGTAGATTTGACAGTATTTATGCTCAAGGGTCTAAAATTGTATAGAGTACTTCTATGAA

Function

symbol description
rorc Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in immunodeficiency 42. Orthologous to human RORC (RAR related orphan receptor C).

NR:

description
Rorab protein

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09299769_09306497.mRNA True 2321 mRNA 0.44 10 9299769 9307385

Neighbor

gene id symbol gene type direction distance location
CI01000016_09266373_09278553 NA coding upstream 20638 9265565 ~ 9279131 (+)
CI01000016_09259876_09260073 NA coding upstream 39568 9259641 ~ 9260201 (+)
CI01000016_09240403_09243601 NA coding upstream 56168 9239745 ~ 9243601 (+)
CI01000016_09228083_09231481 NA coding upstream 68134 9228083 ~ 9231635 (+)
CI01000016_09183871_09184200 TMEM238 coding upstream 115342 9183376 ~ 9184427 (+)
CI01000016_09317824_09332379 NA coding downstream 10337 9317722 ~ 9332714 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding downstream 33109 9340494 ~ 9349036 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding downstream 50232 9357617 ~ 9361063 (+)
CI01000016_09363759_09363932 NA coding downstream 56374 9363759 ~ 9364373 (+)
CI01000016_09364728_09366356 VAMP1 coding downstream 57264 9364649 ~ 9366356 (+)
G98280 NA non-coding upstream 72861 9224449 ~ 9226908 (+)
G98392 NA non-coding upstream 88003 9211350 ~ 9211766 (+)
G98391 NA non-coding upstream 123809 9175199 ~ 9175960 (+)
G98385 NA non-coding upstream 173838 9125719 ~ 9125931 (+)
G98375 NA non-coding upstream 201666 9085228 ~ 9098103 (+)
G98290 NA non-coding downstream 18989 9326374 ~ 9375553 (+)
G98271 NA non-coding downstream 68832 9376217 ~ 9378050 (+)
G98409 NA non-coding downstream 92570 9399955 ~ 9402046 (+)
G98414 NA non-coding downstream 96482 9403867 ~ 9404218 (+)
G98415 NA non-coding downstream 96982 9404367 ~ 9404679 (+)
G98288 NA other upstream 297052 8996098 ~ 9002717 (+)
G97824 NA other upstream 1283994 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1514046 7783987 ~ 7784996 (+)
G96389 NA other upstream 2138479 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 3891906 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 488246 9795950 ~ 9842576 (+)
G99041 NA other downstream 617033 9924418 ~ 9925654 (+)
G99410 NA other downstream 927015 10234400 ~ 10236851 (+)
G99456 NA other downstream 987006 10294391 ~ 10298904 (+)
G99940 NA other downstream 2364260 11671645 ~ 11672873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009824 rorc coding NC_007127.7 CM002900.2 17913936 ~ 18088024 (+)