CI01000016_09524279_09527107


Basic Information

Item Value
gene id CI01000016_09524279_09527107
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9523617 ~ 9527207 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09524279_09527107.mRNA
CTAGAAAACTGACACTTTAGATCAAGTCTCAGATCTGACATGAAGGTCACAAATAGAAGCAAATAATTCATTTTCATGGACTTATAGTTTGCTTGTCATTATTTCCTGTTTTCTTTGTTCACGTTTCCCGCCACTTGTTTGTTAGCATGGATATTCATTTAATCATCATAGCTGTTCGTATTTGAGTTCATTATCATAGTCAGTTCATTGTCGGTTATTGTTTGTGTTATACATACGCACTGTTACACCTTGTGGATTATCTGAGTTTGATTTATTATTAAGCATCCTTGTATCGAAACCTTTTGACACTTCTTCATCTTTGGATTTTTATAGTTGTGACAGAATAACCAACCGCAAAATGAATTATGCAGCTAAATTTGCTGCGTTGACCAGAAGAGGCCAAAATTTTAGGGGCTACACTCTTCAATTTTGCCACCTTGCCGTTCGTTCACCATTTGATGATGAAACCATCAAAACTTTTTATTGGATCGGGGCAAACTATAAACATCAAGTAGACCTCCCAAACATGCAAGGACTCAGCTGGAGGGATGCCATTCTGCTATGACTGGAGAGGTTCTACCCCCGGTCCATCTCATCACCGGACACAGAGCCCAGCCCACCACTGCCCTCCAACACATAGCAACACATGTAGCCTCCAAAAGATGGAGTGCCAACGTCTGCCAATAGTGGATGTGCCCACCATTGCATCGGAGCCTGAGCCCCTTACATCTGACCTGGCGTGTGAGCCGGCCACCGAGCCCGTGACAGAGGAAATACTAGTGGAGTTTGAGGGAATGGAGGAGTTCCCTGCCCACAACCCTGCCACAAGCAGGGCCCTCACTAAAGGCCACCATCTGCTGTTCCTTTCTTTCGAGCAACCCCTGAGTGCTGCTGACGGCCTCTTCCCAGCTCTGATCCCGATCCTAACACCACTGCCGCGCGGAATGGAATGCTCGGCTAATTCTAAGAGAAGGAACAAGGGAGGGGGGAGAGGGTGTCTATATGAACATCACCCCTTTAGAGAGGGAGAGATCTTTCATCTGATTTCCCTTTTAATCCCCTCATTCACCCGAATTATTCTCCGGTGTTCAGAGATTGCTCCTGTCCTCTTGGGCTGAGAAACGGCCATGTCCTAAATCAATATTTGCTGTTTTGTCGGTTGGCAAATTGTCTTTCTTGTTTTTATCAAACTTTCCAGCCCTAGCAATGAAAGTTTTA

Function

NR:

description
hypothetical protein cypCar_00038824

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09524279_09527107.mRNA True 1218 mRNA 0.45 3 9523617 9527207

Neighbor

gene id symbol gene type direction distance location
CI01000016_09364728_09366356 VAMP1 coding upstream 157261 9364649 ~ 9366356 (+)
CI01000016_09363759_09363932 NA coding upstream 159244 9363759 ~ 9364373 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding upstream 162554 9357617 ~ 9361063 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding upstream 174581 9340494 ~ 9349036 (+)
CI01000016_09317824_09332379 NA coding upstream 190903 9317722 ~ 9332714 (+)
CI01000016_09615039_09616082 NA coding downstream 85584 9612791 ~ 9617419 (+)
CI01000016_09663511_09664293 NA coding downstream 136304 9663511 ~ 9664495 (+)
CI01000016_09664848_09674309 CEP192, SEH1L coding downstream 137641 9664848 ~ 9674728 (+)
CI01000016_09686132_09706397 CEP192 coding downstream 158925 9686132 ~ 9706453 (+)
CI01000016_09731997_09734823 NA coding downstream 204790 9731997 ~ 9734823 (+)
G98463 NA non-coding upstream 3446 9519857 ~ 9520171 (+)
G98464 NA non-coding upstream 4003 9519341 ~ 9519614 (+)
G98462 NA non-coding upstream 6350 9516660 ~ 9517267 (+)
G98460 NA non-coding upstream 14805 9508610 ~ 9508812 (+)
G98454 NA non-coding upstream 24132 9499250 ~ 9499485 (+)
G98913 NA non-coding downstream 7174 9534381 ~ 9534733 (+)
G98925 NA non-coding downstream 24199 9551406 ~ 9551843 (+)
G98926 NA non-coding downstream 24844 9552051 ~ 9552499 (+)
G98927 NA non-coding downstream 26522 9553729 ~ 9553938 (+)
G98929 NA non-coding downstream 29150 9556357 ~ 9556594 (+)
G98288 NA other upstream 520900 8996098 ~ 9002717 (+)
G97824 NA other upstream 1507842 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1737894 7783987 ~ 7784996 (+)
G96389 NA other upstream 2362327 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 4115754 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 268424 9795950 ~ 9842576 (+)
G99041 NA other downstream 397211 9924418 ~ 9925654 (+)
G99410 NA other downstream 707193 10234400 ~ 10236851 (+)
G99456 NA other downstream 767184 10294391 ~ 10298904 (+)
G99940 NA other downstream 2144438 11671645 ~ 11672873 (+)

Expression


Co-expression Network