CI01000016_09615039_09616082


Basic Information

Item Value
gene id CI01000016_09615039_09616082
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9612791 ~ 9617419 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09615039_09616082.mRNA
ATATATATGTGCCTCCTCTGCTTTCTGTCTCAGCATAGTTTTAATTAGCAGAGCCAGACAGGAGAGAGAAGGGCAGCAGTACAGCTTCCATTAGAGAGAAAAGAAGAGGAGAGATACAAAGAAAAAGGAAGGGATGGAGCAAAAGAAAAGAAAAGAGAGAGAACTGCCGCTGTGCTTCCCCTGGTCAATTAGTGTTGCCAGAATGAGAGAGGGAGAGAGAGATTGGGAACTGAGTGCTGGTGAGGGAAAGGCGGTGTATCGGCCCCATAACTATCTCCTGCATTTTAATTAGCTGAGTGAACAGTCCTCCACGGGATACTCCACATACCGACCCATCACCATGACAGCCACAGAACAGCGTTCCGGGTAGCCAGACACGGTAGGAATATTTAGCTAACAAATTGAGTGCCAGGCTGAGTGTTTGACTCCATCTCAAGGCTGTGTTTTCCCTCCAGTTAATGACCTATAGGACTAAAAAGAGACCCAGACTGTTTGAAAAGCCTCCAAAACCATCATTGCACTGTGCCAAAGTGGAAGTCATTTAGTAACTAAATAGAAGACCCTCTAATCACATTGTATGTTTGTACACATTTATCATTTCAAAATGGTTAATATTTTATTAGAATGACAGTGTATATTAAAAATTATATATACACTCACCAAGGCTGTATTTATTTGATCAAAAATACAACAACAACAACAGTAATGTATTGAAATATGTATCTATTTATCCATTTATTATCTATTTTAATACATTTTAATTTAATATTATGTTATTGTCACAGTATGGTTGAGGCAAACATGAAAATAAAGGCTGGATCTAATCACAAGCAGTTGATATTTAATGGAAACAAACTCAAAATAACACTTCTCAGAATCTCAGAATGCAAAAACACGGTGAACTGAACAACCACTATATAATGACAAAATTGGACAAAGTACATAAACACAGGGCTCTATATACATAGGATAATTAACAGAAGTAAATGAGAAACAGGTGCAGGGACGTCCATGCACTTTAAAACAAAAGTCCAACAGAGGAGGGCGGGAGGATGCATAAGAGGAGGACGCAGAACTAGAAGACGGGACCACCAAGGTTGAGGGAAGAGCCAGGGAGTGGATGACAGCGGGATGAGCAAGGGAGTGACCCTCCAACAGAGTCGGCGGAACTTAAGGAGGGAGGAGCCATGGTGTAGCCACGACTGAGGTGGAGACGATAGTGGTAGAGACACAGGAGGAACCGATGTGCTGAAGACCCAGTGTGACACTGCTGTACTGGAGGCCAGAGGCGGAGGTGGACACGGGGACTCTGCAGTTGGAGCCTGAGGGAGCAAGGACAATGGTGGAGCCGGAGGGAAGGAAGAGCCTGTTGGAGCCAAAAGGGTGGAGAGACAAGGAGTAGCCAGTGGACTGGAAGCCCATGGCTAAACCAGGGTGATGACTGATCAAGGCAGAGCTGGAGGGACGAGGGAGCCCGGCAGAGCTTAAGGGATGAAGAGCCACGGTGGAGCTGAGGGAGCATGGAGCCAAGGTGGAGCTGACTGGTCAACAGGACGAGGTGGAGTCCAGGGCTCGGAGTCTTGAGGTGGAGCCAGGGGAACGACATACCTAGGCAAAGCTGGTGAACAGGAAGCCCAAGGCAGATCCGAGTTGCTAGGTGATGCCAACAAAGGAGGAGCCAAGGGCTGAAGGGAGCCAGTGTAGACATGGGCGAGAACTGGATGGCATATGCAGAAGAGGTGGGAGCGGGAGGCTGGGCAAGAGCATCCATTTGGTGCTGGGTAACAAAACAGACTTGACGCTGGGCGAAGAAACAGACTTGACGCTGGACAATGAAACAGACTTGAAGCTGGACAATGAAACAGACTTGACACTGGGCAGCGAAACAGACTTGAAGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCACTGGGCAATGAAAGAGACTTGACACTGGACAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTAACACTAGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGGCACTGGGCGAAGAAACTTGACGCTGGACAATGAAACAGACTTGGTGATGGGCAACAAAACAGACTTGACGCTGGGCAACGAAACAGACTTGAAGCTGGGCAACGAAACAGACGATGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCACTGGGCAATGAAAGAGACTTGACACTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGAAGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCACTGGGCAATGAAAGAGACTTGACACTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAGCGAAACAGACTTGAAGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCACTGGGCAATGAAAGAGACTTGACACTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACACTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGAAGCTGGGCAACGAAACAGACGATGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGGCGCTGGGCAAAGAAACAGACTTGACGCTTGGCAACGAAACAAACTTGACGCTTGGCAATGAAACAGACTTAACGCTGGGCAAAGAAACAGACTTAACACTAGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGACGCTGGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGGCGCTGGGCAAAGAAACAGACTTGACGCTTGGCAACGAAACAAACTTGACGCTTGGCAATGAAACAGACTTAACGCTGGGCAAAGAAACAGACTTAACACTAGGCAAAGAAACAGACTTGGCGCTGGGCAACGAAACAGACTTGACGCTGGGCAACGAAACAGACTTGGCGCTGGGCAATGAAACAGACTTGGCGCTGGGCGGCAGATAGGCGACAAAGAAGACTTGAAGCTAGGTGGGACCAGCAGCGACAAAGGATACTTGGAATAAGATGAAGAAGGAGACGTGGGACTGGACGATGAAGCAGACTTGGAACTAATCTTTTCACATTCCTCAATAATAACAATGGATTCGAGCTCAGCACACTTACTTTAGCCTTGGGAATTAGGATGGGGCTCCACTCCATACCCTCAAACATCCGTGAGTATTCCCACTGGAACAGACAAAGAAATCTGCTCACACAGCTGGTCAGATTCTACTTTCAGCTCAAGCTCCGGGACAATTGTGGCCTCAAGGCCTGGCTCTAGGTCTGCGGTGGGCTCAGGCTTTGGATCCTCGTTGGACTTCAACTCATTTTTCATGGCGGGCTCGGGCTCTGAATCTGCAGTGGGCTCAGTTTTGTGATCCATTGGAGGCATGGCTGCTGGTGCATCATGAATAATCCTCCTCACTCTCACCGATGGTGTAGGGGAATCTGCACTGTAAAAGCACTCAGTTGATAAACTCTTGTAAAGTCCCTCAAGGGGCATCTACGGGGAGGTGTGCTTTTTAGTCCGCTGATTCAAACCTGCCTGGAAAAACATGCAGAGGCTGTTGTCATCATAGTGGATGAGATGAAGCAGATCTAAAAACCTCTGTGTGCTCCTTGAGGGAAAGATCTCCCTGGAAGAGGAGGAGGATCCAAACTACAGCTAGATCCATGATCAGGTCTGATCTTCTGTCATGGTAGGGTTGAGGCAAACACGAAAATATAGGCTGGATCTAATCGCAAGTTTATATTTAATAAAAACAAACTCAAATAACACTTCTCAGAATCTCAGAATACAAAAACGCAGTGAACAGAACAACCACTATATAATGTCAATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09615039_09616082.mRNA True 4629 mRNA 0.48 1 9612791 9617419

Neighbor

gene id symbol gene type direction distance location
CI01000016_09524279_09527107 NA coding upstream 85584 9523617 ~ 9527207 (+)
CI01000016_09364728_09366356 VAMP1 coding upstream 246435 9364649 ~ 9366356 (+)
CI01000016_09363759_09363932 NA coding upstream 248418 9363759 ~ 9364373 (+)
CI01000016_09357617_09361063 PSMD4B, PSMD4, PSMD4A coding upstream 251728 9357617 ~ 9361063 (+)
CI01000016_09340494_09349036 PIP5K1A, PIP5K1AB coding upstream 263755 9340494 ~ 9349036 (+)
CI01000016_09663511_09664293 NA coding downstream 46092 9663511 ~ 9664495 (+)
CI01000016_09664848_09674309 CEP192, SEH1L coding downstream 47429 9664848 ~ 9674728 (+)
CI01000016_09686132_09706397 CEP192 coding downstream 68713 9686132 ~ 9706453 (+)
CI01000016_09731997_09734823 NA coding downstream 114578 9731997 ~ 9734823 (+)
CI01000016_09748780_09759954 MRS2 coding downstream 131361 9748780 ~ 9760383 (+)
G98953 NA non-coding upstream 15077 9597475 ~ 9597714 (+)
G98950 NA non-coding upstream 25478 9587112 ~ 9587313 (+)
G98949 NA non-coding upstream 26223 9586229 ~ 9586568 (+)
G98935 NA non-coding upstream 44580 9567985 ~ 9568211 (+)
G98932 NA non-coding upstream 49332 9563160 ~ 9563459 (+)
G99013 NA non-coding downstream 130564 9747983 ~ 9748261 (+)
G99022 NA non-coding downstream 148559 9765978 ~ 9769724 (+)
G99023 NA non-coding downstream 152446 9769865 ~ 9773224 (+)
G99024 NA non-coding downstream 168191 9785610 ~ 9786563 (+)
G99034 NA non-coding downstream 239093 9856512 ~ 9856848 (+)
G98288 NA other upstream 610074 8996098 ~ 9002717 (+)
G97824 NA other upstream 1597016 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1827068 7783987 ~ 7784996 (+)
G96389 NA other upstream 2451501 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 4204928 5405791 ~ 5407963 (+)
CI01000016_09796196_09842235 NA other downstream 178212 9795950 ~ 9842576 (+)
G99041 NA other downstream 306999 9924418 ~ 9925654 (+)
G99410 NA other downstream 616981 10234400 ~ 10236851 (+)
G99456 NA other downstream 676972 10294391 ~ 10298904 (+)
G99940 NA other downstream 2054226 11671645 ~ 11672873 (+)

Expression


Co-expression Network