CI01000016_09664848_09674309 (CEP192, SEH1L)


Basic Information

Item Value
gene id CI01000016_09664848_09674309
gene name CEP192, SEH1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9664848 ~ 9674728 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09664848_09674309.mRNA
ATGTTTGTCGCGCGCAGCATTGCAGCCGATCACAAAGATCTGATTCACGATGTTTCATATGATTTTCACGGGCGGAGAATGGCGACGTGCTCCAGCGACCAAAGCATTAAGGTGTGGGACAAGGGTGATAATGGAGAGTGGAACTGCACAGCCAGCTGGAAAACTCACAGTGGCTCAGTTTGGCGAGTGACCTGGGCCCATCCAGAGTTTGGACAGGTGTTGGCATCCTGCTCCTTTGACCGTACTGCCATAGTATGGGAGGAGATTGTTGGAGAGTCCAATGACAAACAACGAGGGCAAAGCCACTGGATAAAGAGAACCACACTTGTGGACAGTCGGACATCTGTGACCGATGTGAAGTTTGCCCCGAAGCACATGGGCTTGATGCTGACCACATGTTCTGCAGACGGGGTAGTGCGAATCTACGAGGCCCCTGACGTGATGAACCTGAGCCAGTGGTCCCTGCAGCACGAGATCTCGTCCAAACTCTCCTGCTCCTGCATCTCGTGGAACCCTTCCAGTTCTCGAGCTCACGCTCCTATGATTGCAGTGGGCAGTGATGACAGCAATGTGACGTATGGCGGCAAGGTTCAGATATACGAGTATAATGAAGTTACAAGGAAATATGCCAAAGCAGAGACACTGATGACAGTTACAGATGCGGTACATGATATTGCATTTGCTCCAAATCTGGGCCGGTCTTTCCATGTACTTGCTATTGCCACCAAAGATGTTCGCATCTTCAAACTGGTTCCACTTCGAAAGGACAGCTCCTCATCAGCGCCCACTAAATTTGAGGTGCAGGTGCTGGCCCAGTTTGACAGTCATAACTCTCAGGTGTGGCGCGTCAGCTGGAACATCACCAGTACAATTCTGGCCTCCTCTGGTGACGATGGCTGTGTGAGACTCTGGAAAGCAAACTACATGGACAATTGGAAATGCACAGGTATTCTAAAGGGAGATGGCAGTCCAGTATATGGGTCATCTGGTCAGCCTGGTGCTCTGAGTGGCGTCCTGGGCTCTGCTGCTGCACAGAGTGCTCTAAACGGGGCCACTGGAAGATAGATTACATTCTACAGGACCACCCTGAGGAAATATGGAGCCGAGCTCTTATATGATACGGGACTTCACACTGAGACCAACTGATTGTGCTTGATGGACATGCAACAAGACTAGCACTTAACATGGGTCCATTATTCTGAACTGCCTTCAAGGAGTGATCTTTAAGTTTACTTTTCTTTCTATCTGTACTATTATGTTTTACTCTGAAAGCAGACTGAATGGCTTTCAAGATTATGTTGTAATGAGTCATATTTGAATGGATGCAAATGCCTTGTTCACAAAAGGGACTGTCTTTCTATATAGGACTATACATTTTATTTCTGTTGTCACATCAACATGATTAAGGAAAAAAATATGCTGCCATTATAACACTGCAAAAGTTTGGTCTAATTGACTTCACTCTGTGTTATTAAACCAGAATA

Function

symbol description
seh1l Predicted to enable structural molecule activity. Predicted to be involved in several processes, including attachment of mitotic spindle microtubules to kinetochore; cellular response to amino acid starvation; and positive regulation of TORC1 signaling. Predicted to act upstream of or within several processes, including chromosome segregation; mRNA transport; and protein transport. Predicted to be located in lysosomal membrane. Predicted to be part of Seh1-associated complex and nuclear pore outer ring. Predicted to colocalize with kinetochore. Orthologous to human SEH1L (SEH1 like nucleoporin).
cep192 Predicted to enable protein kinase binding activity. Predicted to be involved in centriole replication; centrosome-templated microtubule nucleation; and mitotic spindle assembly. Predicted to act upstream of or within centrosome duplication and protein localization to centrosome. Predicted to be active in centriole; cytoplasm; and pericentriolar material. Orthologous to human CEP192 (centrosomal protein 192).

GO:

id name namespace
GO:0019083 viral transcription biological_process

KEGG:

id description
K16725 CEP192; centrosomal protein CEP192

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09664848_09674309.mRNA True 1484 mRNA 0.47 8 9664848 9674728

Neighbor

gene id symbol gene type direction distance location
CI01000016_09663511_09664293 NA coding upstream 353 9663511 ~ 9664495 (+)
CI01000016_09615039_09616082 NA coding upstream 47429 9612791 ~ 9617419 (+)
CI01000016_09524279_09527107 NA coding upstream 137641 9523617 ~ 9527207 (+)
CI01000016_09364728_09366356 VAMP1 coding upstream 298492 9364649 ~ 9366356 (+)
CI01000016_09363759_09363932 NA coding upstream 300475 9363759 ~ 9364373 (+)
CI01000016_09686132_09706397 CEP192 coding downstream 11404 9686132 ~ 9706453 (+)
CI01000016_09731997_09734823 NA coding downstream 57269 9731997 ~ 9734823 (+)
CI01000016_09748780_09759954 MRS2 coding downstream 74052 9748780 ~ 9760383 (+)
CI01000016_09788926_09791625 SDC2 coding downstream 114198 9788926 ~ 9791923 (+)
CI01000016_09796196_09842235 NA coding downstream 121222 9795950 ~ 9842576 (+)
G98953 NA non-coding upstream 67134 9597475 ~ 9597714 (+)
G98950 NA non-coding upstream 77535 9587112 ~ 9587313 (+)
G98949 NA non-coding upstream 78280 9586229 ~ 9586568 (+)
G98935 NA non-coding upstream 96637 9567985 ~ 9568211 (+)
G98932 NA non-coding upstream 101389 9563160 ~ 9563459 (+)
G99013 NA non-coding downstream 73255 9747983 ~ 9748261 (+)
G99022 NA non-coding downstream 91250 9765978 ~ 9769724 (+)
G99023 NA non-coding downstream 95137 9769865 ~ 9773224 (+)
G99024 NA non-coding downstream 110882 9785610 ~ 9786563 (+)
G99034 NA non-coding downstream 181784 9856512 ~ 9856848 (+)
G98288 NA other upstream 662131 8996098 ~ 9002717 (+)
G97824 NA other upstream 1649073 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 1879125 7783987 ~ 7784996 (+)
G96389 NA other upstream 2503558 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 4256985 5405791 ~ 5407963 (+)
G99041 NA other downstream 249690 9924418 ~ 9925654 (+)
G99410 NA other downstream 559672 10234400 ~ 10236851 (+)
G99456 NA other downstream 619663 10294391 ~ 10298904 (+)
G99940 NA other downstream 1996917 11671645 ~ 11672873 (+)

Expression


Co-expression Network