CI01000016_09970010_09999304


Basic Information

Item Value
gene id CI01000016_09970010_09999304
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9969915 ~ 10000721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_09970010_09999304.mRNA
TTATTTAAGCCCGCCAAACATCAACGTGAGAGAGCGATAATCAAGCTGAATACGATTCAATCTGAGCAAAAACAAAGCTGGGGCGAGGAATAAAAATGGCGGAGGTAGTTGTGGGAAATGGGGAGCAGGTCTGGTCTGTGGTTGCATTGGTGGATTACTCCGACACAGAGAGAGCATATCTAATCAGCATTCCTGAAACCGAGCCGGGTCGATACGCTGCGTGGACGAGAAGCCCAGGCTGCATGCGAACTAGCCGAGCTGCATCCCCGGAATTCCACCAGCTTCGTGAACTGGGAATCATGCTTGATCCAGCAGCCGTCTACCTGTTTCTAATCAGCTGTTTTCAGCACTGCTATCAATTTGCAAGTAATGTGTTTCGGAGAAGTCTGGCAGAGGGACATAATGGAAGAGTAGCACTGCTTTTCCGTATTGATCAGAAGGCTATGCAATGGCCTTGGCTCACTGACTACTGGATCAAGTTCATGTCAAGAAATTTAAATTTTCAAAACACTGCAAAGATGAACAACTCGCTCAGAAACATTTGCCGGTATACAAACATCGGCAGAGCTGGCCCATGGGGCTTGCTGCTCGAGGTTTCATGGGTCCAGGGTTCCGGGCTGCTTGACACGCAGGAGAGCGAATCACGAGTTGCGGTTCCTGTGTCTGCATGTGGACGTGCAGTAAATGATGGGTTTGTGAAGAGCCGTGGCAGTGACGGATGGTATGTGGCTAACCAGGCTCACATAATTATAGGACCAAACCGAGGCTCCAGGGCCCCGCCTGGCTTTCTGGGAAATCGAAGCGCAGATGGAGCTGTAGAAGAACCACCAGGAAAAAAGTGGCATGTGTAGCCCCAATCCACTGCCATTTGGATTTTGCGTGCACCATGCACACAGAGCAGCCTTTTTAAGATTATATTGAGTTAGCGTTTATGGGATTTGAAGAAGTCCTTCCTTCTTTTGACTCACTCAAGTGCTGAGTTGTTGCTAACAGGTCCAGAAGCCTCAGGGCAAGATAATCCTGCAAAAAAATTTCAATCAATGACATAGATGAAACTTTTTCAAAAATCTTAGTCATCTTTGAACATGCAAAAGATGCTTTTAATCCCTCTGAATGTCTGACGGGTTTTGTTATATTGATTTCTTTTGTGATGGTCATGGGTAATAAGCGCACTGCTCACTACTTGACTTAAATTAGCAGTGCGTGCTCCTCCAACCTGCAAACATCCTTCATCCCAGCTGATGTTCAATTTGTATTCCATTTTTCCAACATCTCAAGAATACAAATGAAGACTTCTTTCTAATGCGCAAGGCGAGGCTTTCCAGAAGAGCCCATATCATTATAGAGAAGGGAAAGTTGCAGAGAATTTCATTCCTATTATGCGCTGATAATAATTCAATGTTTCAAACATGAGATCTCCTTAAAAAGTCACCTAAGTGTCTGAGCTCTAAAGATTGGAACAAAGGGAAGAATGTGGCAGCCCTGCGACTTGACACTGCACCCGACTGGCTCCAGTGTGTCATGTGCTTAAAAGGGGATTAGAGATAGAGACTGAACTTGCTGTCTGCAGCATGGCAGACTGCTGGCATATAGACACTTTTTGTTTGTAATTCACCCACTTAGTTTTAAAGAAAAATTGAAGAATCCTTAAATAACACTGCTGCATCCTTAAATTTCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAGAACACAAATGTTAGTTATATTTCCTTTGTTGTCATTAACTTAACAGGTCTCTTTCAACTTTATTAAAGCCAAACATATACTTCAGAGGAATTGTTGTTAGGGAGAAGGGGGTAAGAGGTGCCAGTGTTTACTTATGTTGTTGTGTAGGAACTGAGAAAGGAGACTTATTCCTAATTAGGCATATTTCAGGACATTTGAAATTAAGATGACAGCATCTATAACAAAAGGCCATACAAATGTGACATACAAAAAGTAATTATTAGTTATTTTTAACAAAAACAATGTAATAATTATCCCTTTCCAAGTCTTATGGCTGGTTCACACAGAATGTTTTGTTGTGTTCCACTAAACTGTTTTTCTATATAAGCGTGACAGTTGCACTGCGCCTCACTGCTCTTTCTGAGAAAATTTTCAGAAAAAAAGTTTTAAAAATGGCTCTTCGTATTGTTGCACATTGTTCCATTCTTAAAAGATGCATAAATCAACCAAAAAATTAAATTCTGAAAAACTAATTATGGTTTATAAAAAAATATTTTACTGAACACA
>TU112942
AGTCGATACGCTGCGTGGACGAGAAGCCCAGGCTGCATGCGAACTAGCCGAGCTGCATCCCCGGAATTCCACCAGCTTCGTGAACTGGTAGCTGAATACCAAATTGAAAGTAGATGTGTAAATACAATTCTTGTGAGTGTTTCTTTACTTCCTCAGAAGTGATTATCCGTGGCAGCAGATGTGATAAATCTGGAAATCTTTCATATGTTTACCTCTCTTCCACCGCTGGGGACACACAGTATTTGCCAGTTTGTTTCAGTCGTTCACATTAATTAGGCTTCGGTTTCAGTCAAATCCCACCCTTAAGAACAGGGTGAAGGAAATGTTTTGACTCTTGTAGAACAGACTTGAGCTTAGCTGTAGATTTTTAATCAAGGGGGATCTGAGGATGTGGCCGTGTTCTACATCTGAATACAAGTGCAGACGGAGGAGCTAAATTACGAGGCAAAAGAAAAACAAAAAATGCTATGGAACTTTGTTTTAATTATTAATATTGTCTTGTCCGTGAAATTAATGTTGTTTACACTGTCAAATCAAACGTGGGCATTTAGGGGTTTATATTTTAATGTGTGTTAAGAGTCCTAACAACAAAGCGTATATATTAAAAGTCCTG
>TU112943
AGTCGATACGCTGCGTGGACGAGAAGCCCAGGCTGCATGCGAACTAGCCGAGCTGCATCCCCGGAATTCCACCAGCTTCGTGAACTGGTAGCTGAATACCAAATTGAAAGTAGATGTGTAAATACAATTCTTGTGAGTGTTTCTTTACTTCCTCAGAAGTGATTATCCGTGGCAGCAGATGTGATAAATCTGGAAATCTTTCATATGTTTACCTCTCTTCCACCGCTGGGGACACACAGTATTTGCCAGTTTGTTTCAGTCGTTCACATTAATTAGGCTTCGGTTTCAGTCAAATCCCACCCTTAAGAACAGGGTGAAGGAAATGTTTTGACTCTTGTAGAACAGACTTGAGCTTAGCTGTAGATTTTTAATCAAGGGGGATCTGAGGATGTGGCCGTGTTCTACATCTGAATACAAGTGCAGACGGAGGAGCTAAATTACGAGGCAAAAGAAAAACAAAAAATGCTATGGAACTTTGTTTTAATTATTAATATTGTCTTGTCCGTGAAATTAATGTTGTTTACACTGTCAAATCAAACGTGGGCATTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_09970010_09999304.mRNA False 2268 mRNA 0.41 6 9969915 10000721
TU112942 False 613 lncRNA 0.40 1 9970741 9971353
TU112943 True 551 lncRNA 0.42 1 9970741 9971291

Neighbor

gene id symbol gene type direction distance location
CI01000016_09934128_09954587 NA coding upstream 14587 9934128 ~ 9955328 (+)
CI01000016_09897221_09902690 NA coding upstream 67033 9896846 ~ 9902882 (+)
CI01000016_09868120_09886212 NA coding upstream 83682 9868076 ~ 9886233 (+)
CI01000016_09796196_09842235 NA coding upstream 127339 9795950 ~ 9842576 (+)
CI01000016_09788926_09791625 SDC2 coding upstream 177992 9788926 ~ 9791923 (+)
CI01000016_10042324_10051398 CTNNB1.L, CTNNB1 coding downstream 41295 10042016 ~ 10052367 (+)
CI01000016_10333877_10334229 NA coding downstream 333156 10333877 ~ 10334346 (+)
CI01000016_10339126_10370881 TRAK1 coding downstream 334537 10335258 ~ 10372651 (+)
CI01000016_10421936_10422623 NA coding downstream 419854 10420575 ~ 10424516 (+)
CI01000016_10508464_10510408 NA coding downstream 507743 10508464 ~ 10510832 (+)
G99063 NA non-coding upstream 29091 9921181 ~ 9940824 (+)
G99062 NA non-coding upstream 49436 9920267 ~ 9920479 (+)
G99056 NA non-coding upstream 69836 9899553 ~ 9900079 (+)
G99040 NA non-coding upstream 105692 9864003 ~ 9864223 (+)
G99034 NA non-coding upstream 113067 9856512 ~ 9856848 (+)
G99281 NA non-coding downstream 67523 10068244 ~ 10068606 (+)
G99283 NA non-coding downstream 69184 10069905 ~ 10070116 (+)
G99284 NA non-coding downstream 69398 10070119 ~ 10070348 (+)
G99287 NA non-coding downstream 73629 10074350 ~ 10074666 (+)
G99288 NA non-coding downstream 74980 10075701 ~ 10076012 (+)
G99041 NA other upstream 44261 9924418 ~ 9925654 (+)
G98288 NA other upstream 967198 8996098 ~ 9002717 (+)
G97824 NA other upstream 1954140 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 2184192 7783987 ~ 7784996 (+)
G99410 NA other downstream 233679 10234400 ~ 10236851 (+)
G99456 NA other downstream 293670 10294391 ~ 10298904 (+)
G99940 NA other downstream 1670924 11671645 ~ 11672873 (+)
G100178 NA other downstream 2159920 12160641 ~ 12162845 (+)

Expression


Co-expression Network