CI01000016_10042324_10051398 (CTNNB1.L, CTNNB1)


Basic Information

Item Value
gene id CI01000016_10042324_10051398
gene name CTNNB1.L, CTNNB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10042016 ~ 10052367 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_10042324_10051398.mRNA
CTATAAATTCAAATGTTTGCTGATTTTAAAAAAAGACATTTGTTTTAAAACATTTTAATATTGTCACAGTATCAACAAAACCTCATCGTTGTCAGCTGGGTAGATAATGTTACCTTGATGTCATTTACATTGTTTTACATACGTTATGTAATAACTTCTTGACCATTTTTTTGTGGCTGATAAATGCACTTTTGAAGGATAAATGTAGAAACTCCTACAATAACCCCTAAATTCCTGAATTATCACAAAGGCCTTTGATTTCCTGTAGCTCTGTTTATTGTTCACCATGTGTCTTTCCGGGGAGTATCATGAGGGACCTGCAGATAATAAGAGTAGCTGTGTTTGTAGTGCGGCACATCCTGCCTCACTCTTTCATCCCAGCTGCAGTCAGGTTAGGAGACACTGACTTGATGGAGCTGGACATGGCCATGGAGCCGGATCGCAAGGCTGCGGTCAGCCATTGGCAGCAGCAGTCTTACCTGGACTCAGGTATCCACTCTGGGGCCACAACCACTGCCCCATCCCTGAGTGGCAAGGGCAACCCAGAGGATGAAGATGTGGATAATCAGGTGCTTTATGAGTGGGAGCAGGGCTTTAACCAGTCCTTCAACCAGGAGCCGGTAGCAGACATTGATGGTCAGTACGCCATGACCAGAGCCCAGAGAGTCCGGGCGGCCATGTTCCCCGAGACTCTAGATGAGGGCATGCAGATACCTTCCACACAGTTTGACTCTGCTCACCCCACCAATGTCCAGCGCCTGGCCGAGCCCTCGCAGATGCTCAAACACGCCGTGGTCAACCTCATCAACTACCAGGACGATGCAGAGCTGGCCACCCGTGCCATTCCAGAGCTCACCAAACTACTGAATGATGAGGATCAGGTGGTGGTTAATAAGGCAGCTGTGATGGTGCATCAGCTCTCGAAGAAGGAGGCCTCTCGTCACGCCATCATGCGATCCCCACAGATGGTGTCAGCCATTGTGAGGACCATGCAGAACACTAGTGATGTAGAAACGGCCCGCTGCACCTCCGGCACCCTGCACAACCTTTCCCACCACAGAGAAGGTCTGCTTGCCATCTTCAAATCGGGAGGCATCCCTGCCCTCGTCAAAATGCTTGGCTCCCCGGTGGACTCTGTATTGTTTTATGCCATTACGACTCTACACAACCTGCTACTGCACCAGGAAGGGGCCAAGATGGCTGTCCGTCTGGCTGGAGGCCTACAGAAAATGGTGGCCTTGTTAAACAAAACAAATGTGAAATTCCTCGCCATCACGACAGACTGCCTTCAGATTCTGGCATACGGAAATCAGGAAAGCAAACTTATCATTCTGGCCAGCGGAGGCCCACAGGCTCTGGTCAACATCATGAGGACCTACACCTATGAGAAACTATTGTGGACCACCAGTCGAGTGCTCAAAGTGCTCTCTGTTTGCTCCAGTAACAAACCTGCCATCGTTGAGGCTGGTGGCATGCAAGCACTTGGCCTCCATCTCACAGACCCCAGTCAGCGACTGGTACAGAACTGCTTGTGGACTTTGAGGAATCTTTCAGATGCTGCCACCAAACAGGAGGGTATGGAGGGGCTCTTGGGCACCCTGGTCCAGTTGCTCGGTTCAGACGACATCAATGTGGTGACGTGTGCTGCTGGAATCCTGTCCAACCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGCCAAGTGGGCGGCATTGAGGCCCTCGTGCGCACTGTTCTTCGTGCCGGAGACAGAGAGGACATCACAGAGCCCGCTATCTGTGCTCTCCGTCACCTTACTTCCAGACACCAGGATGCAGAGATGGCCCAGAATGCAGTGCGGCTGCACTATGGGCTGCCTGTGGTGGTCAAATTACTCCACCCTCCCTCACATTGGCCTCTCATTAAGGCCACAGTTGGACTAATCCGTAACCTGGCGCTGTGCCCTGCCAACCACGCCCCGCTCAGAGAGCAGGGTGCCATTCCCCGCCTGGTGCAGCTTCTGGTCAGGGCCCATCAGGACACTCAGAGACGCACCTCCATGGGTGGAACACAGCAGCAGTTTGTGGAGGGTGTGCGAATGGAGGAGATTGTGGAGGGCTGCACTGGAGCTCTGCACATTCTAGCCAGAGACATTCATAACAGAATTGTCATCAGAGGACTCAACACTATTCCACTTTTTGTTCAGTTGCTGTATTCTCCTATCGAGAACATCCAGCGTGTGGCTGCAGGTGTGCTGTGTGAGCTGGCTCAGGATAAGGAGGCAGCCGAGGCCATCGAGGCAGAAGGAGCCACCGCTCCCCTCACAGAGCTACTCCACTCCAGAAACGAGGGCGTTGCCACGTACGCTGCCGCAGTTCTGTTCCGCATGTCTGAGGATAAGCCCCAGGACTACAAGAAACGACTGTCTGTGGAGCTCACCAGCTCTCTGTTCAGAACTGAGCCCATGACCTGGAACGAGACTGGAGATCTAGGGCTGGACATCGGTGCACAGGGAGAGCCTCTAGGCTACAGACAGGACGACCCAAGCTACCGCTCCTTCCATTCCGGAGGTTACGGGCAGGATGCCATGGGCATGGATCCCATGATGGAGCACGAGATGGGCGGGCACCACCCCGGCCCAGATTACCCCGTAGACGGCCTTCCCGACCTCGGCCACGCCCAGGACCTGATCGACGGCCTCCCGCCAGGCGACAGCAATCAGCTGGCCTGGTTTGATACCGATCTGTAAATACAATGACTTTTTAGGTGAGGCACCAAGACGCCCGAACACGCACTCGATTCGCGAACGGCCGGTTGTGTTTGATCTGTGCTGACCGCACTGTGTGTAGGAGATTTGAAAGGCTGGAGTAAAGCACGCCGGTAGCAGAACTAATCTGAGCTGCATCTGAATTCATTACAATCCTGTATGTGTGCGTTTAATGGGATTCTAATCTGTTTGTCCCCTCTTTTCTCTCTGCTGCAGCTGTATCGTCTGATCTGAATGAACCTGCATTGTGATTTTGGCCTGTAGAGTTGCTGAGCGGGCTCAAGAGAGTGGGCTAGTTTCTCTGAAAGTGCCTGACACACTAATACAAGCTGAGTTTCCTATGGGAACACATGGAAGTAAAACTTTTGTTCTGGTCTTAGTCGGTCAGAATTTGGTGTGATTGACAGAAGAAAGCCCAAAAAGCAAATCCTAAGATGGAGTTTTCAACCTTAGCCTTGCCTGTACTTTTTATTACGTTTTATTTTTCAAAGGATATTTCAGTCTGTAATGGTACTTATCTAGCTTGCTTTATGATATTCGTCTTTTATTTTGCAGAACTTTGTATTCCTTTCGACTGTCTCTCTTTCTCTCATAGTGTTGAGTTATAGTGGTAATGATCCATCCGAGATTTTATCGAGTTTATGGTGTAGAACACTAATTAATCAGTTCAATTGTATTCTTATCAAATGTAACATTGTGTAGCTTTTGTATAAAACCAAGAATTGGAGAAGTCCAAATATCAGTTCTCTTGCTTTAATGAAATCACAAATGTTCCAAAGGGTTTGCAATCAGTTGGGGCCAGTTTTGCTCTTTATTTTTTTTCTTTTTATTTCTTTTCCCTGTCTTGATCTATTTTTTTTGATGGTAGCTTTAGAAAGGTTTTGAAAAGAACCCCTAATTATTGTAGCCTGCAATTGTTGGTTGGAGACTTGGTTATGACCTGGCTAAACA

Function

symbol description
ctnnb1 Enables cadherin binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification. Acts upstream of or within several processes, including determination of dorsal/ventral asymmetry; ectoderm development; and glomerular filtration. Located in several cellular components, including intercalated disc; microvillus; and zonula adherens. Part of catenin complex. Is expressed in several structures, including EVL; adaxial cell; brain; germ ring; and gonad. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant non-syndromic intellectual disability 19; exudative vitreoretinopathy 7; hepatocellular carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple). Orthologous to human CTNNB1 (catenin beta 1).

GO:

id name namespace
GO:2001234 negative regulation of apoptotic signaling pathway biological_process

KEGG:

id description
K02105 CTNNB1; catenin beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_10042324_10051398.mRNA True 3701 mRNA 0.50 14 10042016 10052367

Neighbor

gene id symbol gene type direction distance location
CI01000016_09970010_09999304 NA coding upstream 41295 9969915 ~ 10000721 (+)
CI01000016_09934128_09954587 NA coding upstream 86688 9934128 ~ 9955328 (+)
CI01000016_09897221_09902690 NA coding upstream 139134 9896846 ~ 9902882 (+)
CI01000016_09868120_09886212 NA coding upstream 155783 9868076 ~ 9886233 (+)
CI01000016_09796196_09842235 NA coding upstream 199440 9795950 ~ 9842576 (+)
CI01000016_10333877_10334229 NA coding downstream 281510 10333877 ~ 10334346 (+)
CI01000016_10339126_10370881 TRAK1 coding downstream 282891 10335258 ~ 10372651 (+)
CI01000016_10421936_10422623 NA coding downstream 368208 10420575 ~ 10424516 (+)
CI01000016_10508464_10510408 NA coding downstream 456097 10508464 ~ 10510832 (+)
CI01000016_10587199_10588775 CNOT10, CNOT10.L coding downstream 534832 10587199 ~ 10588775 (+)
G99063 NA non-coding upstream 101192 9921181 ~ 9940824 (+)
G99062 NA non-coding upstream 121537 9920267 ~ 9920479 (+)
G99056 NA non-coding upstream 141937 9899553 ~ 9900079 (+)
G99040 NA non-coding upstream 177793 9864003 ~ 9864223 (+)
G99281 NA non-coding downstream 15877 10068244 ~ 10068606 (+)
G99283 NA non-coding downstream 17538 10069905 ~ 10070116 (+)
G99284 NA non-coding downstream 17752 10070119 ~ 10070348 (+)
G99287 NA non-coding downstream 21983 10074350 ~ 10074666 (+)
G99288 NA non-coding downstream 23334 10075701 ~ 10076012 (+)
G99041 NA other upstream 116362 9924418 ~ 9925654 (+)
G98288 NA other upstream 1039299 8996098 ~ 9002717 (+)
G97824 NA other upstream 2026241 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 2256293 7783987 ~ 7784996 (+)
G99410 NA other downstream 182033 10234400 ~ 10236851 (+)
G99456 NA other downstream 242024 10294391 ~ 10298904 (+)
G99940 NA other downstream 1619278 11671645 ~ 11672873 (+)
G100178 NA other downstream 2108274 12160641 ~ 12162845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002527 ctnnb1,LOC107570993,LOC107701997,LOC107748497 coding CM030136.1 CM030136.1 17806735 ~ 17811727 (+)