XLOC_007936 (fibpa)


Basic Information

Item Value
gene id XLOC_007936
gene name fibpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 30713736 ~ 30724165 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015484
CGGCGCACACCCGGAAGTAGTCGCGACAGATTGTTGTTGCTATGGATGAAGCGTAGCCGCTATATTAGACAGTTATTCCATGGCAGCCATTTAACTTACATGCTAGTTAGTACTGCTTGACCAACAGTATGCAAGCTTAACTTACCTATCCGACAAGCTTATGTTTTCGAGTGAGCAGCCGCTGGATTCAAAACAAGAGCTAACTTAATGTTGTGACATCTGAATGTGATTCAAACCTGCTCATTCGCTTGTGTCCGCGTTCATAGTGCCCATGTCAAGATGTCTGTGGAGCTGGATGTTTTTGTTGGAAACACCACCATTATGGACAAAGAAGTGTATCAACTGTGGCTGAATGGATATACAGTGAATGATGCAGTGAAGGTGCGGATAGAAGGAGGTGTGATGGAGGAGTGTGAGGCGAGTGCAGATGTGCTGCTCAGTGACACAATGGACCAGTACAGAACGTTTCAGATGTGCGAGAGACTTTTACACCACCCAGCCAAACTGGCCAATCAGCTTCTGTTTCAGATACCGCCAGACCGACAAGCCATGCTCATTGAACGGTATTATGCTTTTGATGATTTGTTTGTACGTGAGGTCTTGGGAAAGAAACTGTCAAAAGGAACTAAAAAAGATCTTGATGACGTCAGTGCAAAGACAGGCATTTCGCTGAAGAGCTGCCGAAGACAGTTTGACAACTTCAAGCGAGTGTTTAAAGTGGTGGAAGAACTTAAGGGCCCCCTGGTGGAAAATATACGACAGCACTTTCTGCTACCTGATCAGTTAGCCAGAGACTATGCTGCAATCGTGTTCTTTGCCAATAATCGTTTTGAGACGGGGAAGAAGAAGTTGCTGTATTTAACCTTCCAGGACTTTGCCTTTTGTGCTGGGCAGCTCATCAACCACTGGACTCTCGGAGCCGTGGATAACATGATGGAGGACATGGATGTAGATCTGGATAAGGAATTTCTTCAAGACCTCAAAGACCTCAAAATTCTAATCACAGACAAGGATCTCTTAGACCAGCACAAAAGTTTAGTGTGCACTGCTCTGAGGGGTAAAACCAGTGTCTTCAATGAGATGGAAGCCAATTTTAAGAATCTCTCAAGAGGCCTTGTAAATATCGCTGCCAAATTAATCAACGCAAAAGACGTCCGTGATTTCTTCATTGACCTTGTGGAAaagTTTATTGAGCCATGCCGATCAGACAAATGGACATCAATAGACATGAACCTCTTCCTTACTCATTATACTAATTCAGCTCATATCCTTGACACCTTCAAGCACCATGCGGTCTGGACTAGGTACATGGGAGTTATCAAAAGTTGCATTCTTCGGATGTACCATGACTAAAGaatctataattattattatttgcttcaTCTGCATGCACTCCAGCATCTGATTTAAACTGATGTTTAATTTTCCCCTGTGCATCATCTTCTTGCTTTAATCCTTTCCCAAATATATCCTCCCCCACCAGCTGTCCATCTCTTCACATCCCTCTCTTTTTTTTATCCTTTCTTCATTCTTTCACCCTTGGCCTCTAGAACTGTATGACTTGTAAATAAACACAGCATGATTTCCACAGA
>TCONS_00015485
GAACGTTTCAGATGTGCGAGAGACTTTTACACCACCCAGCCAAACTGGCCAATCAGCTTCTGTTTCAGATACCGCCAGACCGACAAGCCATGCTCATTGAACGGTATTATGCTTTTGATGATTTGTTTGTACGTGAGGTCTTGGGAAAGAAACTGTCAAAAGGAACTAAAAAAGATCTTGATGACGTCAGTGCAAAGACAGGCATTTCGCTGAAGAGCTGCCGAAGACAGGTGGACTGTCTGAAACTATACATTTCTCATATGCTACTAAGATTTGTTTTGAAGTGATTACAGTACATCTTTCTCCTCAAATACAGTTTGACAACTTCAAGCGAGTGTTTAAAGTGGTGGAAGAACTTAAGGGCCCCCTGGTGGAAAATATACGACAGCACTTTCTGCTACCTGATCAGTTAGCCAGAGACTATGCTGCAATCGTGTTCTTTGCCAATAATCGTTTTGAGACGGGGAAGAAGAAGTTGCTGTATTTAACCTTCCAGGACTTTGCCTTTTGTGCTGGGCAGCTCATCAACCACTGGACTCTC

Function

symbol description
fibpa Predicted to enable fibroblast growth factor binding activity. Predicted to be active in nucleus. Orthologous to human FIBP (FGF1 intracellular binding protein).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0005634 nucleus cellular_component
GO:0017134 fibroblast growth factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1363 Predicted to enable fibroblast growth factor binding activity. Predicted to be active in nucleus. Orthologous to human FIBP (FGF1 intracellular binding protein).

Ensembl:

ensembl_id ENSDARG00000016058

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015484 False 1592 mRNA 0.43 11 30713736 30724165
TCONS_00015485 True 541 lncRNA 0.44 3 30719181 30720358

Neighbor

gene id symbol gene type direction distance location
XLOC_007935 efemp2a coding downstream 9661 30669662 ~ 30704075 (-)
XLOC_007934 npas4a coding downstream 70917 30636955 ~ 30642819 (-)
XLOC_007933 tmem265 coding downstream 125875 30580681 ~ 30587861 (-)
XLOC_007932 pfdn6 coding downstream 156099 30550397 ~ 30557637 (-)
XLOC_007931 her11 coding downstream 172769 30538482 ~ 30540967 (-)
XLOC_007937 fosl1a coding upstream 15311 30739476 ~ 30747686 (-)
XLOC_007938 prss23 coding upstream 78300 30802465 ~ 30808174 (-)
XLOC_007939 ubl3b coding upstream 130388 30854553 ~ 30876708 (-)
XLOC_007940 slc7a3b coding upstream 153797 30877962 ~ 30897177 (-)
XLOC_007941 si:ch211-126c2.4 coding upstream 174090 30898255 ~ 30918662 (-)
XLOC_007641 CU855896.1 misc downstream 28305896 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 28306305 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 28306664 2406945 ~ 2407072 (-)
XLOC_007930 FP015860.1 non-coding downstream 176852 30511481 ~ 30536884 (-)
XLOC_007925 NA non-coding downstream 415565 30297374 ~ 30298171 (-)
XLOC_007920 NA non-coding downstream 1006693 29706704 ~ 29707043 (-)
XLOC_007919 NA non-coding downstream 1012102 29701320 ~ 29701634 (-)
XLOC_007918 CABZ01048945.1 non-coding downstream 1360613 29353007 ~ 29353123 (-)
XLOC_007951 BX248522.1 non-coding upstream 602436 31326601 ~ 31326717 (-)
XLOC_007952 NA non-coding upstream 742441 31466606 ~ 31469460 (-)
XLOC_007954 dre-mir-457b non-coding upstream 797765 31521930 ~ 31522007 (-)
XLOC_007957 BX511227.4 non-coding upstream 908981 31633146 ~ 31635433 (-)
XLOC_007960 AL929434.1 non-coding upstream 1135265 31859430 ~ 31859506 (-)

Expression


Co-expression Network