CI01000016_10339126_10370881 (TRAK1)


Basic Information

Item Value
gene id CI01000016_10339126_10370881
gene name TRAK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10335258 ~ 10372651 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_10339126_10370881.mRNA
CTATAAATATAGAGTGGAAAAAATGCCTTCAGACGTTATAAATGCTGGTTTTGATAGTTGTCCTTTAGTGAACAGTATAGTCATCAGACATTGTAGATCCCAGTTTTACAGCAGAGTGTGTTTGTCTGTTATTCACACTGGTTCATTAAGAGCTGATGCCCTGTATTTGATGCCCTGGATCTTATGAGCTATTTTTAGCTAATATGTGAAAGAGCTGTATGACAGTTCAAACTGAGGCCCATCTCTGAGTTGGAGACTGTGGCTTTAACATGATTTTAACCAAATCTTTCACAGTGCATTATGTTATGTAATATATGCAAAATTTTGTTAAAAACCAACTCATTCAGAAAGAGACACCACTACTGTGTGTTGCTTGGAGATGCACAACAGTTGATCCTATTGTGGCTTTGTTTGGAACTTTTTTGGAGCAAAAAGACTGTCAATACTGTCAAAAATGTAAGTTACTCAATATTAAATTTCTTAATACTTACTATGGAGAACTTTAATATGGAGTTATAGGGACCGTTCATACAGAACACATTTTTCCATTCCAATGTGCTGCTTTTCCATTGTTTTTCAGTGTAAGCATGTGCTAGACGGACTTCTTTAACCATTGCTCTCTCCTCTCGCATCTTTTTGCGGGCATATCGTGCATGACAGACAGCATGCTAAAAATACAATGCTCAAGTTAAAGGCACAATACAGATTTTTGCATTAAAATATCCAAAAACCACTAGCTCGGTGTTAAATACTGTATTTTGCTCACTTGTGTACTTACATTATCCCAAATGTTTCCAACAATGTTTGAATCCAGAGAAATGCACAATTTTAACCAGTGTAGCCTGTCAGTGTTGTCATGTCCGTGTTATTCTCAGTTTACGCTTTTACTGCCGTAGAAACCATGGCAACACATTGAGTTTAATGAAAAAGTAGTTGTAGCGTCTAGCACGCCACTCTGTTGTTGTTTCGCACATTCGTTATGGACCACAGTTATTCGTTATGGATTGCAGCAGGTTCTGTCACCAAATGTAAACATGCGGCTGACTCAAATGACCCAAGAAGAATTTTGGACAAGAGAAATAAAATGAGGATCAATATCAGTGTGGCATTTTCTGACACTGTTTAACAAGTCTGGTGAACAAGTCTATGGCAGTGTAATTAAATACAGTATGTGTTATACATAAATAGTAAGTCAGCCTTTTTGCAAATGCTTTGGGTGTGTTTGAATTTACTTTTAGTATGATTGTTTTGACAATGTAAAACTGCGCTGTGTTACCCCACAATTTAACAGAATTAGTGGGTGGTGGTGGTCAGAATTATTGGCACCCTTGGTAAATATGATCAAAGATGACTATAAAAATAAATCTGCATTGTTTATCCTTTTGATCTTTTATTAATAAAATTAGCAAAAAACTAACCTTTAATTAAAGGAAAAGAATTGAAAGTGGGGGGGGATCACATTATGAGATAAATGTTTTTCTCGTTTTTCTGCATTGTTTATCCTTTTGATCTTTAATTCTTAAAATTAGCAAAAAGCTAGCCTTTCATTGAAAGAAAATAATTGAAAGTGGGGGAAAAAAAAAAAAAAAAAAATCACATTATGAGATAAATGTTTTTCTCCAAAACATGTTGGCCACAATTATTGGCACCCTTTTTATTCAATACTTTTTTCAACCTCCTTTTGCCATAACAGCTCTGAGTCTTCACCTATAATGCCTGATGAGTTTGGAGAACACCTGACAAGAGATCAGAGACCATTCCTTCATGCAGAATTCCCAGCTCCATGTTGGTGCTTCTTCAGTTCACTCCACTCATTTTCTTTAGGGTTCAGGTCAGGGAACTGGGACGATGGCAGATGGCAGAAGCTTCATTTTGTGCTCATTGACACATTTTAGCTATTTTTTTATAGCCATTTTCTATTTTGTGAAGCTCAACAATCTTTTGCTGCACATAAGAACTATATTCTTCGTTGTGATAAATGATTTAGGGAATTTGGCCTTTGTGTTTCCTCATGTTTATACTCCAAGTCATGGCTGGACAATATCATGTTCCTGATCACCCTGGTGTGCTAAAATGTAAATATGAATCATGTGAATATACTTCATAGATATTTTACTCATAAAAAATTCTAGGGGTGCCAATAATTGTGGCCAACGTGTTTTGGAGAAAAACATTTATTTCATAATGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTCACTTTCAATTATTTTCTTTCAATGAAAGGCTAGCTTTTTGCTAATTTTAAGAATTAAAGATCAAAAGGATAAACAATGCAGTTTCATTTTTATAGTCATCTTTGTTCATATTTACCAAGGGTGCCAATAAATCTGACCACCACTGTATGAAAAAATGTATTACTTCAAATTATTTTTTATTTTATTTTATTTTATTATTATTATGATTATTATTATTATTATTATTATTATTTGTTTTATTTCAATTGTGAAATACATTTGTAAGATACTGAATTGGATTTATTTTTAATTTGTGCTTTTTTTTTTTTAACCCCATGGTTTTATCAAATGAACCAGTTTACATAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACATAATGATTGATTTCTTTAACTATTTTCATAAAAAAAATGTCTTAATGTAAAAAAAAAAAAAAAAAAAAAAAAAATTATATATATATAATTAAATCAGCCATGGTAATTATAGACATGATTTTCCCCTTTGTTTCCTCCAATTATTCATATCATATCAACTCCATAAATCCATTATCCAACCAGCATGATGTCATCAGTATGAGCCTGCTGCCGGTATCAGCCGATGAGGTGGCAACTGGAAAGTCACCAATTGCAGGTCGACGACACAGGAAAATGACATCACAGCTGAACGCAAGCTTGTGATTGGATGATTCACACCATTAGCTTGTGGTGATTAGAGGAGTCAAACAACCAATTGTATCAAATTAAATCAATGCAAAGAATAACAAGCCTTTGGATAGAATAAAGAAGCAAGGATTTTTGAGATCTTTTTTTTTTTTTTTTCACCAGCATATTTGTTGCTGTTCTTGGCACAGTGAATTGCAGAGAGTCAGCTGCTACTTTTGGCAGGCAGACAGCACAAGAACACCTGCCATCACTGTACCAGCCACTTACTGTACACTTGAGCTGAGCAGCAAAATGAAATATTCCATGCATGCATCACTACTGCTGCTATATGTGTGGCAGAAAAGATCAATGGAAGAGTGATGGAGAAAAAACAGAGGGAAAGTTAAGCAACAGAGCACGTGCAGACACCAACACAGCCTGGAGTCAGAGCCAGTTGCTATGGCAACCTCTCTAGAGGGAGGCGCCTTGGAAACAAGAGAGATGAGGAGACGGGGTTGGGCTGTGACGAATGCTTAGAGAAGACCAGAGCAGCTATGATGAAGTGTGCTGTGATTGGCTGGCTTTTGGGGTAAGCCCCGCCCTCCGAAGTGTGATACAACCTTGACTATAGCAGTACGGTTTCCTGCGCAACACTGTTGGCTTTTAGGGACACTGCATTTTTCTCTCTATCATCCCTTGTTCTCTGACCTTGTGTGTGTAGAATGCATTGTGATTAGTTAGTGGTAGATCGGCTACCGAGCTGCTGGGAGAATGGGTGGCCGTGGGTACTTGTATGCGTGTGTGACCTCAGACGGTGGACAGGAGAGGCTGCAGCTCACGGCTGAAGGAGACTGAGCATGCAGAGGTTCGTGGAGGCAGATTACTACGAGCTGGACTGGTACTATGAAGAGTGCACTGACGAGATACTGGAAATATCTACCTCATCTTTCTTAAGCTCAAACAGTGCTGATGATGAGGATGATGAAGATGCAGAGCCGTATACGCTGGAGCAAGAGTTGATTGTTTCAGGAGAAGAAAAACAGTATGGAGCAGGTGTGTGTTTAAATGAGGGCTGCTACAGGAATGTTTCTGTGTGGTTTATGGCTGGGTGTTGCTGGCAGGTCAATATCTGGGTGTTGGATTCAGTTCTATGTGCTGATCGAGTGGGCCAGATGACTAAGACATATAATGACATAGATGCTGTGACACGTCTCCTGGAGGAGAAAGAGCGGGATTTGGAGTTGGCAGCACGTATTGGCCAGTCTCTGCTGAAAAAGAACAAAACCCTCAGTGAGAGGAACACCTTCCTGGAAGAACAGGTGGAGCACATACGAGAAGAGGTGTCTCAGCTGCGTCATGATCTCTCAATGAAGGATGAACTTCTGCAGTTCTACACAAGTGCAGCTGAAGAGAGTGATGGAGAGTCTGCTTCTACCACACCTATTCGCAGAAATGACTCGTCTTTCACGCTCCCAACTTACCTCCCTCTGGATTCACTGCAGAAAAAACTCCAGGACTTGGAGGAAGAGAACATCGTCCTGCGATCAGAGCTTAGCAGTGCAGTTAAGAAAGTCATGGACTTCAGATACCAAGGGGTTAGTCAACTGTATAACGTGCCTTTAAAGGGGATTAGGGACTTTCCACGTTTTGTGTTTACCAAAGGAGATGCTAACATACAGATCTCCACCATTGCGGAGGAGCTGGCTAAGAAAACAGAGGATGCCTCTCGCCAACAAGAGGAAATCACACACCTTCTCTCTCAGATCGTGGACCTGCAGAAAAAAGCCAAATCTTATGCACTAGAAAATGAAGAGCTCACCCAGCATCTGGGAGCTGCTAAAGACGCCCAAAGAGCACTAACTGCAGAGCTGAGGGAGCTGGAGGATAAGTATGCCGAGTGTATGGAGATGCTTCATGAAGCTCAGGAGGAACTGAAGAACTTCAGGAATAAAACGCTGCCTCTCAGTACACCGCGACGATTCCACTCACTCGGCCTGTTCCCCATGGACTCTTTAGCTGCTGAAATTGAAGGCACCATGAGGAAAGAGATTCAGATGTCTGATCCAGACGTAGAGGAACAAAGGTTGCACCCAAAACGTGTCTTCGAGACAGTGCGTAACATCAACCAGACGGTTCGGCAACGCTCCATGGGCCCATCCCCTATGAACATCCCAGGGTCCAATCAGACATCCTCTATGAACTCCAGGCGTTCTAGCTGTCTGAGCACACCCCGATCCAGCATGTACGGAGGGGACGGTGTTGAAATGGACAACCGCACTAACAGTATGCTGCTGGAAACCCAGTCATCTCAAGATGGCTCTAATGACTCCAACAGAAAGCCTGGCACGCCTGGCACACCCGGCTCCCATGACCTGGAGGCGGCACTGCGTCGCCTTTCCCTTCGACGAGACAACTACCTTAGCGAGCGGCGTTTCTTTGAGGAGGAGAGAGAGCGTAAACTCAACGCCCTGGCAGAAGACAAAAGCGAATTGTACGAGGACAGAGATGTTTGTAGTGGCAGTGAAGACGGCGGTCCTCTTACTCCGGCAGACAGCATCATGTCTCTTGGCACCCTGCACTCGGTTTACTCCATCTACAGCGCCCGATCCTACCTGCCAGAGAAACTCCAGATTGTCAAGCCTCTGGAAGGTTCGGCCACTCTGCACGCATGGCAGCAGCTCGCGCAGCCACACCTGGGCGGCATCCTGGACGCACGGCCGGGCGTTGTGACCAAGGGCTTCCGACCGCTAGAGCTGGACCTGGAGGAGGTGTACCAATTCACTGACCTGGAGGAAGATGAGCCAGGACAGCATTCCCAATCCGGCATCTCCTCTTGCCTGGGTTCTCTGCCTTGCTCGCCTGCTTTGCGACGACCACGTGCCAACAATCCTGACAACCAGGAAGAACAGCTCAGAGAAAATGGAGGGACCCCTGGAGTGGGGCCAGACCGAATGGAGGCTGGAGTGGAAGAGGTCTCATCTGTGCATTTTCCTGGTAAATGTATGTCTCACACCAGCTCCACGTACACTTTCACCACCTGCAGGATACTGCACCCTACAGATGAACTCACCAGAGTCACACCCAGTCTCTTGTCTGGTCCATCACTGGCCTCCTGCGTGATGTCCAACAGCAGTCTGCGCTCAACCCCTGTGTCCACCCCCTGCACGCCTCGTCGCCTCAGCCTGGCGGAGAGTTTCACCAACCTCCGCGACTCAACCAAGACCACCAGTACCTCTCTGGGCCTTGTGCGCCTCCTACAGGAGAGAGGTATATCTGCTGCTGTCTATAACCCTCTCAGTTGGGACCGGGCGGATCGAGCCCCTCCACCAGACCCCTACTCATCACACACTGCCAGCCCCTTACACACCTGTCCGGACACGCTCCCTTCCACCCCTCCAAACTCCCCCAGCAAGTCCAAACCCGCCAGACCTGTGCTCCCTGTAGACTACAGCCCCTCAGACCCCCCCTACGAAACCTTTCTGGCTTCACGGCCAGCTAGCTCCATTCTAAAGGAAGTGCGGGAGGCGGACGAAAGGGCTCAAACAGATACGCAGTGTCAGACTGAAGTCAGTGTGCAGAACCTGAGACTTGTGGACAAGGTGAAGAAGTTTAGCATGGCTCCCAGAACATTGGCCCCAGGGATCGGAAGGCCAGGACCGCCATTCGGAGCCCACGCTGTTGTGACCTCCCCTATCGGGGGACTGCCAGTGCTGAACTCAGGGATGAGAAGAAACCGCAGTTACCCAGCTATGGTTGGGGCTAGTATGGCTATGAAGGGTCCAGGGCCTCCCAGTGAGGACCTGCTATTGGCCCATGGGCCACCCAGACAAACTAGCCTCAATGAAAAGTGAATGTTGCCTCTCTGTCGTCCCCTTTTGCCTTTTATTTGTTTAAATTTGCATTGATACAGTATATCATCCTTGCGACAACTCGAGTGCCTGTTATTAAGATGATATTTGTATAGATTATTTTGTTATAACAGTTGATATAACAACCTCTTTTTTGTCTATTTCTCTCCGCCTGACCAACATATACAGTACAGTTCATTCAGCATTGTCACATAGCTTGGCATATTCCAAGCTTTTGTCATTGTGTGACAATTTGCACTTGCTAGCTGTGAGAAAACGTAGCATACAAACAGAGCAGAAAATTCATGCCCCAAAATGATTTCCAGTTGAAGCACTTTTTTGAATTTAAAAACTACTCTAGGATAAGCAAGAAAATGTCTTTTTTTTTTTTTAACTAAATCTGGTCTTCCGGTGTGACATTTCAAGATTTGTTAGTTTTGTGATGCTAGCAAGAGCACTGATAGCACCTTAATGCTAATGGTAGCCCAGACATTGGTGATCAATGAAGTCTTGTCATTTCTTATTTATTATTTGGTCTGATTTGGCACTTTTTAAAGGCCATGCCATATTGCTTTTTATCAAGCCCCTATAGTGTGCCAAAAATTTGCTTTTACTAAGTACAAATACCTTCACAGAAGCCTTTTCCATCTAGTCCAGGCAACTGAATAACTGCAGCGTAATGTTTGTCTAAAATGGCTTATTAATGCATAATATAATGGTAATTACAGTGTAATAACACAGTTCAGTAATACGACTCTCAGTAGAGGGCGCTGTTGGCATGAATTGGTGATAATTTGCACATTAGCACATTAACTCTCTGCTCTGTACATCCTCAAAAGTCGACTGAACAGACTGAAGTACTGCAGAGGAAAAACGAGACCACGGGGCTGTGAAGGTGCTGCAGAAAGAAATTGCAGCAGGTTTGAACTTGAAACACAATCATGTTCATGTTAAGTCATCTTTTAATGTCCTTTTGTTGAAGACCAACATTAGTGTATGTGTGTGGATGTACATGGCGTGTGGAATTGCAGTATCGAAGACTTGATGAGAAAATTGCACAACACATTTCATTGGTTAAACCGAAGAAAAAAAAATACTGTACATCTGCTGTGGTTTTGGAACCTACTGACTGATATGTGTCGTATGTAAAGCAAGTGAAGTATGTATTGTGAGCTTTAAAGATTTCAAGGGTGCAATAGGAAGTAATTCATAGTGCCTGATTTTTTTTTTTTTTTTTTTTTGACAGACTGTATCATAATGGCTCCACCTGCCACAGAATGCACTGGCATAAATACTGTAACTATGTGTGATGTATTGACTTAACAGTTATTTTTACCTGACAATGCAGATATTTGAAGGATATATTATATTTAATGTATTGTCGAGGAAGCACATACAGTTGAAACTGCATGAGTTGTTCTAAAGAAAAGGTCTTTTTCTTTTAGTTAAGGCAAATCAAATGTGTTAGGTGAAAATGTGTGCGTATGTGTGTGTGCACATTTAATCATAGCATGACCTTTATTGAATGTGTTTCAGAGGAATTTGCCATGACTGATCATTGATTTCAATGGTGTGTTTATTTCATCAGAAAGGACATTTGTATATTGTAAATGGTAAATATGCAAAGAATTTAAACATGCTAACTTTTTATATATAAAAAGCAAAAAACCTAAACTTGAGGGGGAAAAAAATAAGAAAATGGAAAAGCAGTGACAACTGGTGAAAAGAGGAGTTTTTGTTCATGAATTTTAGAAACTCCCCTTTGCAGGATCA

Function

symbol description
trak1 Predicted to enable GABA receptor binding activity and myosin binding activity. Involved in endosome to lysosome transport. Located in early endosome and mitochondrion. Implicated in developmental and epileptic encephalopathy 68.

GO: NA

KEGG:

id description
K15369 TRAK1; trafficking kinesin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_10339126_10370881.mRNA True 8632 mRNA 0.41 17 10335258 10372651

Neighbor

gene id symbol gene type direction distance location
CI01000016_10333877_10334229 NA coding upstream 912 10333877 ~ 10334346 (+)
CI01000016_10042324_10051398 CTNNB1.L, CTNNB1 coding upstream 282891 10042016 ~ 10052367 (+)
CI01000016_09970010_09999304 NA coding upstream 334537 9969915 ~ 10000721 (+)
CI01000016_09934128_09954587 NA coding upstream 379930 9934128 ~ 9955328 (+)
CI01000016_09897221_09902690 NA coding upstream 432376 9896846 ~ 9902882 (+)
CI01000016_10421936_10422623 NA coding downstream 47924 10420575 ~ 10424516 (+)
CI01000016_10508464_10510408 NA coding downstream 135813 10508464 ~ 10510832 (+)
CI01000016_10587199_10588775 CNOT10, CNOT10.L coding downstream 214548 10587199 ~ 10588775 (+)
CI01000016_10676271_10682495 NA coding downstream 303436 10676087 ~ 10682839 (+)
CI01000016_10748252_10749230 NA coding downstream 375601 10748252 ~ 10749343 (+)
G99455 NA non-coding upstream 35646 10299359 ~ 10299612 (+)
G99454 NA non-coding upstream 42749 10292300 ~ 10292509 (+)
G99453 NA non-coding upstream 43966 10291067 ~ 10291292 (+)
G99451 NA non-coding upstream 48437 10286566 ~ 10286821 (+)
G99449 NA non-coding upstream 52651 10282363 ~ 10282607 (+)
G99461 NA non-coding downstream 13187 10385838 ~ 10386651 (+)
G99484 NA non-coding downstream 101330 10473981 ~ 10474743 (+)
G99362 NA non-coding downstream 143823 10516474 ~ 10522566 (+)
G99365 NA non-coding downstream 198051 10570702 ~ 10572556 (+)
G99379 NA non-coding downstream 221384 10594035 ~ 10594264 (+)
G99456 NA other upstream 36354 10294391 ~ 10298904 (+)
G99410 NA other upstream 98407 10234400 ~ 10236851 (+)
G99041 NA other upstream 409604 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 538318 9795950 ~ 9842576 (+)
G98288 NA other upstream 1332541 8996098 ~ 9002717 (+)
G99940 NA other downstream 1298994 11671645 ~ 11672873 (+)
G100178 NA other downstream 1787990 12160641 ~ 12162845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location