CI01000016_10421936_10422623


Basic Information

Item Value
gene id CI01000016_10421936_10422623
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10420575 ~ 10424516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_10421936_10422623.mRNA
GTATATATACCCATCCAGACGAGGTGTGTGCATCCCATCTGCCACCAGTCATCCCATCCATGATCTTCTGGACCTATAAGACAAGAATTATCAACATTACCAAGTTATCCTCTGCATCTAACGTATCATTCCACTGCCTACTTACCTGTTATCACTGTTCTGCTCAGCTGTTGTCAATAAAGATCTTCATTGATTGTTATATCTGTGAGTCTACATTCCATAACAGAAGACCGGACCAAGACAGTACCAGCAACCTAAGTTCACCTGACCTGTTCCAAGAGATCATGGATTCTATCGCCACTTCCATCACCACCACCACCACTCCTTCACAGACAGTAGTCACCAGTCCCATGGCCAAACTAGCAGCCTAGTCTGGCTTGGCGGATTGCAACGGATTTCTCCTCCAGTGTTCGGTGGCCCTGGAGATGTAGCCGCATCTCTGCGCCTCAGACAGAGTGAAAACCGCTTTCATCATCTCCCTGCTGATGGGGCAAGTGCTCCAATGGGTGGAAACCATCTGGGCTCAGGCTGGTACAGTGACACAGTCCTTAGACAATTTCATCAATCACTTCCGTGAGGTTTTGGGAAAGCCTGTGGGAGACACTTCTGTTGGTGAGCAACTTTATCATTCCTGCCAAGGAAAAATGTCTATTAATGATTATGCTCTCAAGTTCAGGACTCTCGTGGCTGCCAGCGGATGGAATGAGCACTCGCTCCTCACCACCTACCGGCAGGGATTGGAGCCCAAAGTGCAGCTGCATCTCGCTGCATACAATGATTCCATTGGCCTTAAACGCTTCATCCAGTTATCCATCAGAGTTGCCAATCGTATGCAGTCTTCCATCAGTGCTCCAGAATTAGGCACCGAACCAATGCAAATAGACAACACTAGACTAGCTCCAGCTGAGCGGCAGAGGCGGCTGACCCAGGGGCTATGTTTGTACTGTCATATGTCATCTCAGCATGCCCAGTTCGTCCTCCATGGCCTGTGGTGAGTTTTGTGAATACTCCAGCTGTCAATTTAAAGCCACTCACCACTGTGGTTATGCTTACTCCCTCTAACATCTCTATTTCAGTCCATGTACTCCTCGATTCTGGGTCAGCTGGGAATTCCATCTCCAGAAACCTCTGCTGCCAACTCAAGCTTTCGAAGGTCGCAACCTATGCAAGAAGCATGTATGCTTCAGTGTCTGTCCCATTCATCTACGAGTTGGTCAACTGCACACCGAGTCACTTCACACCAAGTCACTTCACTTTACCTCTCTGGGGGATTGCCACCTTGTCGTGGTGGAGAGGCTTGCATGGTCATGTGATCCCAAGAGCAATGTCGTCTGGAGCATGAGATCTTGGTAGGGCCACCCATGGCAGTAATGTCAAGGGGGAGGTCCCTGACAAAGAGCAATCCAACCAAGACCTCAACGGTGGAGCAGGTGGAGGATGATGGCTGGCCTTACTGGAGTGTCACAATGGCTGGGAAGGAAACCACCCTAACATCCCAGTTTAAGTCCTATGGTGACCAGAAAGTGGCGACGGGGGTAGAATTAGTGATCACCATTTGCGGTCAAAAACACAAAACTATGAACTTTGGAGCCTGGAATGTGCGCACAATGATGGATAGTGCAACCAGTGACAGACTGGAGAGGAGAACCACAATCATCGCTAGAGAACTGAAAAAATACCCGATTGACCTAGCCGCCCTTTCTGAAACCCAACTAGCAGATGAAGGACAACTGAAAGAGGAAAAGGGTGGCTACACTTTCTTCTGAAAAGGAAAAGCTGATGATGAGCCAAGGATCCTTGGTGTTGGAATTGCCATTAGGAACCATCTTATCAGTCACCTCTATGAACTTCTTGTGTGGATTAGAGAGCGTCTCATGACTATCTGCTTGCCAACAGCCAGATAGCAACAGTTGTGTGCGCCTATGCCCCTACTTTAGACTCTGAAGTGGAAGCCAACATGACCATCTTCATCAATAATGCAGTACAAACTTCGATGGACAGGCCATGTCATCTGCATGTCCAATTCACGTCTCCACAAACAGATCCTGTACTCCCTGCTGAAGGAAGGTAGTCGAGCAAGTAACAGGCAAAAGAAAAGAGTCAAAAGAAATCTTCGAGTGACTGCAAATGATGATGACGGTTCTGGAGCACTCCACCGCTGATGTGATTCTTGGGCACCCGTGGCTAGTGCAGCATGATCCCACCATGTCCTGGAGGACTGGTGAAGTATTGAATTGGGGCGATAATTTTTCCATGATTGTTTCCCACAAGTTCCTTGACCTGTTTCTCATCAGTCTACGATACTTCCTGTGATCTCCACATCCATTGAGAGTCCCACTGAGAAGCAGTCTGTTGACATCCCTACCTGTTACATCCCCTTCAGTGATATCTTCTGCCCTAAAAAGGCCTCTCAGCTGTCTACATACTGACCATGGGACTGTACCATCGATCTGATTCCGGTTGAGAAAGTGCCCCACAGGAAGATTTATCCCCCGTCACTTCCTGAACAGAAGGCCATGGAGGAGTACACAGAAGAGGCTTTACAACAAGGCTACATCTGCCCTTCTGTGTCCCCTGCTGCTGCAATTTTCTTCTTTGTGGCCAAGAAGGATGGAGGCTTGCAGCCTTGTATTGATTATCGTGCACTCAACAAAATGACAGTGAAGTTTTGCTACCCACTTCCCCTCGTCCCAGTGGCACTTGAACATTTCTGCGGAGCCACAGTGTTCACCAAGTTGGTGTATTCCAGGACTTCATGCATGAGGTGCTCCAGTAGTTCCTCCATTGTTTTGTGCTCATCTATATTGATGACACCCTTGCCTACTGCCGGAGCATGGCCAAATATCGCCAGAATGTTGCAGAGGTCCTGAAATGCCTGAGAGAATACCACCTCTTCCTCAAAGCTGAAAATTGCTCATTCCACAAAATCCTTAGTGCAGTTAGGTTACTGTCACAGATCTGCTAGGTTCTTTCATCAGCCAATCACAGCGCACTCCATCACCTGAATATTAACTACGCACACCTGCACCTCGTCTGCACCCTCATCAATCCACCCATAAAAGCACACACCTCGTCTCAGCTCATTGTCTGGTCTCATTTTAACGAAGTGGACTACTTACCTGATATACAGCGATTTCCCCAGCGATTACTCCAGTGATATTCTCCAGTGATTCCCTCCGGCGATCATTCTCCAGCTTCTTCCTCTCCCTTGTGTATTGGGGAGAGTTAAGTAGACGTGAAGTAAATTCCTATTCCTATGTACATTACCAGTGGACTACACAAAAATTCAAATACTCAGAATTAGGAATCTGTTTTCTTTATAAATCAATATTTTCAAACAAATCTATTGTATAGGATGCCAAAACATGAAAGCTTATAAGACATTATGTAAAACTATGTGGGAAAAAAAAATTTATAGGCTACTGAATCAAAAGAGTAAACCCAACTTCAAGCCAAGTATACTTAGAATACTTTATTATACCTTTAAGTATATCGTGATCAAAAGATTAAGTATAGTATAGGCCAAATGTACTTAGACTTTTCTGTCAGTATAAGTGTAATTGTATATTTCTGAGAAGTACATAAAAGTAGACTGAAAGTATACTTTCTTATTTTTAGTTTAAAAGAAGTATACTAATAGCACACTTGAATAAACTTGA

Function

NR:

description
pol polyprotein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_10421936_10422623.mRNA True 3659 mRNA 0.46 3 10420575 10424516

Neighbor

gene id symbol gene type direction distance location
CI01000016_10339126_10370881 TRAK1 coding upstream 47924 10335258 ~ 10372651 (+)
CI01000016_10333877_10334229 NA coding upstream 86229 10333877 ~ 10334346 (+)
CI01000016_10042324_10051398 CTNNB1.L, CTNNB1 coding upstream 368208 10042016 ~ 10052367 (+)
CI01000016_09970010_09999304 NA coding upstream 419854 9969915 ~ 10000721 (+)
CI01000016_09934128_09954587 NA coding upstream 465247 9934128 ~ 9955328 (+)
CI01000016_10508464_10510408 NA coding downstream 83948 10508464 ~ 10510832 (+)
CI01000016_10587199_10588775 CNOT10, CNOT10.L coding downstream 162683 10587199 ~ 10588775 (+)
CI01000016_10676271_10682495 NA coding downstream 251571 10676087 ~ 10682839 (+)
CI01000016_10748252_10749230 NA coding downstream 323736 10748252 ~ 10749343 (+)
CI01000016_10756608_10758149 NA coding downstream 329877 10754393 ~ 10758201 (+)
G99461 NA non-coding upstream 33924 10385838 ~ 10386651 (+)
G99455 NA non-coding upstream 120963 10299359 ~ 10299612 (+)
G99454 NA non-coding upstream 128066 10292300 ~ 10292509 (+)
G99453 NA non-coding upstream 129283 10291067 ~ 10291292 (+)
G99451 NA non-coding upstream 133754 10286566 ~ 10286821 (+)
G99484 NA non-coding downstream 49465 10473981 ~ 10474743 (+)
G99362 NA non-coding downstream 91958 10516474 ~ 10522566 (+)
G99365 NA non-coding downstream 146186 10570702 ~ 10572556 (+)
G99379 NA non-coding downstream 169519 10594035 ~ 10594264 (+)
G99498 NA non-coding downstream 180452 10604968 ~ 10606304 (+)
G99456 NA other upstream 121671 10294391 ~ 10298904 (+)
G99410 NA other upstream 183724 10234400 ~ 10236851 (+)
G99041 NA other upstream 494921 9924418 ~ 9925654 (+)
CI01000016_09796196_09842235 NA other upstream 623635 9795950 ~ 9842576 (+)
G98288 NA other upstream 1417858 8996098 ~ 9002717 (+)
G99940 NA other downstream 1247129 11671645 ~ 11672873 (+)
G100178 NA other downstream 1736125 12160641 ~ 12162845 (+)

Expression


Co-expression Network