CI01000016_10600154_10633808 (TRIM71)


Basic Information

Item Value
gene id CI01000016_10600154_10633808
gene name TRIM71
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10599202 ~ 10633808 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_10600154_10633808.mRNA
ATCAATGGAATGTCCTTGGGATGGCCAGAGCTCTGCAGCTGAGTGTGGGCAGCCTCCACTACCCCTAATCCCAGCCATAATAATGGGGTCAAAAGGTCCCTCCCAAAGCCCTGTCTTTCAGCCTGGCATCCCACTGCTTTATTGGGCAGCCTGCATCTGGAGCCTAAGCCCCACCGAGAAGCTTCCTCCCTTGTCACAAGAGCCACCCCAGCACCCCATCCTAAGTGCCCATAAATGCGCACAAAAGCCAGTCCTACATGTGGTAGCTATCTATTACAGGAGGGGCCCTCAGGAGGCGTATAGCATCGATTACAAAAAGGTTAAGATTGATTTCATAGGTTCAGTTATTCTTTGGTCCTCTGCGCAAATGGCGTCTTTCCCAGACTCCGACCTGCAAACATGTCCGCTGTGCAAGGAGCTGTGCGGCTGCTCTGCTCCGATCTCCTCCAATTCATCTACCTCCTCCTCGTCCTCCCAGACCTCCAACTCATCTACCTCATCCACCAGGAGACTGCACGTCCTGCCCTGTCTGCACGCCTTCTGCAGGCAGTGCCTGGAGGGCCACCGGAGCCCCGGTGACCCTCTGAAGCTCAGATGCCCCACATGCGACCAAAAAGTGTCTTTGTCGGAATCAGGCGTGGACTCGCTGCCCTCCTCCAACTTTCTCTTCAGCAACCTGCTGGATGTGGTGGTCTCTGCTGAGGAACAGGGCAAGAACGGTCGGTCTTCATCGGTGGTCCATCACGGTGGTCTTCTGAGACCCCAGCAGCTCTCAGACCCTCAGTGCAGCTCGTGTGACGAGGGCAACCCCGCTACCTCCCACTGCCTGGACTGCCAGGAGTACCTGTGCGACAACTGCGTGCGGGCCCACCAGAGGGTCCGACTCACCAAAGACCACTTCATCGAAGGGCTGCTGGAGAGCTTTCACCTGGCCAACCGCACCAACAACTCCAACACCCCGGTCAACATCTCCCAGTCCTTCCATAACAGCTTCTCCATGCTGAATGTTTTCCAGGAGAGGATGGAATTCTGCCAGCAACATGATAACGCGGTGCTGCGTTTTTTCTGTGACAGCTGTGCTGTGCCGATCTGTAGGGAGTGCAGCTTGGGCAGACATGCAGGTCACAGTTTCACCTACCTGCAGGAAGCACTGCAGGACTCCAGAGCGCTGACAATCCAGCTGCTCGCAGACGCACAGCAGGGCAGACAGGCTATACAGCTGAGCATCGAGAAAGCCCAAGCCATTGCTGAACAGGTGGAGCTGAAGGCTAAAGTTGTGCAGTCAGAAGTGAAAACGATCACTCTACGTCATAAGAAAGCTCTGGAGGAACGCGAATGTGAGCTTCTCTGGAAGGTGGAGAAGATCCGCCAGGTGAAGGCAAAATCACTTTACTTGCAGGTTGAGAAACTACACCAGAATCTCACCAAGCTGGATAGTACTATTGCCACAGTGACACAGGTTTTAGAAGAAGGCCGTAGCATAGACGTCCTGCTAGCACGTGAGCACATGTTAAATCAGCTACAGGAGCTTAAATCCCTCCGCTGCTTTCTACAGCCCCAAGAAGACGATCGCATCATGTTTACTCCTCCAGACCAGGCTCTTCTGATTGCCATCAAGTCCATGGGCCTCATCAGCAGTGGAGCCTTCGCCACAGCTTCCAAAGCTCACGGTGAAGGCCTCAAAAGAGCACTGCAAGGAAAGCCAGCTTCCTTTACGGTTGTAGGGTATGATCATGATGGTGAACCTCGGTTGTCCGGTGGTGACAGCGTCTCAGTTGTGCTTATGAGTCCGGATGGTAATCTGTCCAGTGCAGATGTTTCTGACCACCAAGATGGAACGTACAGTGTCAGCTATCTGCCCAAGAGTGAGGGTGACCATTTGCTCTCTGTGCTTATATGCAATCAGCACATTGAGGGAAGTCCCTTCAAAGTGATGGTCAAGTCCGGTCGCAGTTACGGTGGTGTTGGCTTGCCCATTGCAACCTTCGGAGGAGAGGGCGATGGGGATGGGCAACTGTGTCGGCCTTGGGGCATTTGTGTGGATAAGGAGGGCTACGTGGTGGTCGCTGACCGAAGCAACAACCGTGTGCAGATCTTCAAGCCTTGTGGCACGTTCCACCACAAGTTTGGCACTTTGGGCTCACGACCGGGCCAGTTTGACCGCCCGGCTGGGGTCGCCTGTGACAGCCAAAGGAGAATCATTGTGGCAGATAAGGACAATCACCGCATACAGATCTTTACATTCGATGGCCAGTTTCTTCTCAAATTTGGTGAGAAGGGAACCAAAAATGGGCAGTTCAACTACCCATGGGATGTTGCCGTCAACTCTGAGGGAAAGATCCTGGTTTCGGATACACGCAACCACCGCGTGCAGCTCTTTGGGCCTGACGGGACTTTCCTTAACAAATACGGATTCGAAGGTGCCCTCTGGAAACATTTTGACTCGCCTCGCGGTGTGGCCTTCAATCAGGAAGGCCACCTCGTCGTGACCGACTTTAACAATCATCGGCTACTTGTCATCAGGCCCGACTGCCAGTCAGCTCGCTTCCTTGGGTCAGAGGGAACCGGAAATGGCCAGTTCTTGCGCCCGCAAGGCGTAGCCGTGGACCAGGAGGATCGTATTATCGTGGCTGACTCCCGCAACCATCGCATTCAGGTGTTCGAACCCAACGGCAACTTTTTATGCAAGTTTGGGACTCAAGGAAGTGGCTTTGGCCAAATGGATCGCCCCTCTGGTATAGCGGTTACCCCAGATGGAATGATTGTGGCCGTGGACTTTGGAAACAACCGAATCCTCATGTTCTGACCTTTTATCATTGAAATACAAAACTTGTAGCTGTGGACAAATGGAAGAGGAGATTTTGCACATCTATCATGAACAAATGCAGCTTGATCTTAGCGAGGTGACAACAGTTGTGGATAGTTCTGTACGATTCTCAGTGATCGTGTAACACCAAATGCTTGCCGTTACAGCACACAGTTTTGACTGCTGCAAGCTGAGAGTGTTTTGCTCTTGGTATGCGTCTTCAAATCTTGTTTCTTCGTTTTCTTTTTTTTTTTCTCAGGGAATTTCTTGCATTCTTGAAATATTTTCTCTCTGCATCCCACCTACCTCATCTAGCTTATGTATGAATGTACTCACGTTTGTGCAGAGACCTAGTCCGTGAAGTTTTATAAAGAAATGTCTACCTCAGTGTTTTTTTTTTTTGTTTGTTTTTTTTTCGTAAAATGTGAGGACAAAAAAACAAAAACAAAATGAAGCAATGTTTGGATATTTGCACAGTTCGCACAATTTTTTCCTGATTGTTACTGTGCAAAGAACGCAAGTTATATCCCTGAATGTTTCTCATAGTGATGGACAAAAACAGAGCTGCATGTTTTGGCAGAAACATTAGGATCGCATTTTGATATATCTACTGCTATGTTTTTTTCTTTGTTTGAATTTTCGTGTACATTTTAAATCATCTATCTCGTACCTCATCTAAACCTCTTACCTCATTTATCGGATTATACCTCTGGGTCCATGAACCTCATTACACATTTACCTCACATTACGGTCTTTTCCATTTGAAAATTATGCAAGCAGTTACCAAAAATGAATGTTGTATAACTAATGAAAGAGACCGTTAAACTTGGCAAATTATCTGAATTTAGTAATTTAATAGGACCCTCATGATGTAATCAGGAGTTTGCAACACGAGAAATGCAGCTGCAGAAGAACAGATACCCATGATTATTTTAAATGTGTTATGATTAAA

Function

symbol description
trim71 Predicted to enable miRNA binding activity; translation repressor activity; and ubiquitin protein ligase activity. Acts upstream of or within embryonic body morphogenesis. Predicted to be located in P-body. Is expressed in several structures, including nervous system; neural tube; pectoral fin musculature; polster; and solid lens vesicle. Orthologous to human TRIM71 (tripartite motif containing 71).

GO:

id name namespace
GO:0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity molecular_function

KEGG:

id description
K12035 TRIM71; tripartite motif-containing protein 71

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_10600154_10633808.mRNA True 3758 mRNA 0.49 5 10599202 10633808

Neighbor

gene id symbol gene type direction distance location
CI01000016_10571262_10572444 NA coding downstream 25334 10570705 ~ 10573868 (-)
CI01000016_10443526_10488009 NA coding downstream 111016 10442845 ~ 10488186 (-)
CI01000016_10386099_10386648 NA coding downstream 211720 10385825 ~ 10387482 (-)
CI01000016_10228314_10299064 ULK4 coding downstream 300138 10228314 ~ 10299064 (-)
CI01000016_10089136_10135299 NA coding downstream 463903 10088716 ~ 10135299 (-)
CI01000016_10637748_10650217 TCAIM coding upstream 3831 10637639 ~ 10650217 (-)
CI01000016_10740961_10745890 ABHD5A, ABHD5 coding upstream 106138 10739946 ~ 10745890 (-)
CI01000016_10799559_10842613 SNRK, SNRKA coding upstream 165377 10799185 ~ 10843409 (-)
CI01000016_10897488_10911334 NA coding upstream 262378 10896186 ~ 10911334 (-)
CI01000016_10931329_10940939 ENTPD3 coding upstream 297004 10930812 ~ 10941053 (-)
G100351 NA non-coding downstream 47778 10529416 ~ 10551424 (-)
G100379 NA non-coding downstream 120350 10476982 ~ 10478852 (-)
G100378 NA non-coding downstream 123067 10475251 ~ 10476135 (-)
G100324 NA non-coding downstream 247072 10333883 ~ 10352130 (-)
G100302 NA non-coding downstream 311711 10287251 ~ 10287491 (-)
G100413 NA non-coding upstream 18935 10652743 ~ 10715678 (-)
G100352 NA non-coding upstream 31621 10665429 ~ 10681706 (-)
G100350 NA non-coding upstream 102740 10736548 ~ 10736879 (-)
G100346 NA non-coding upstream 103145 10736953 ~ 10737372 (-)
G100358 NA non-coding upstream 113041 10746849 ~ 10749597 (-)
G100190 NA other downstream 546813 10051168 ~ 10052389 (-)
G99178 NA other downstream 784247 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 1086774 9509622 ~ 9512428 (-)
G98691 NA other downstream 1341591 9256102 ~ 9257611 (-)
G98679 NA other downstream 1359273 9234996 ~ 9239929 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010439 trim71 coding NC_007127.7 CM002900.2 7742658 ~ 7793457 (-)
bowfin (Amia calva) AMCG00002536 trim71,LOC107657583,LOC107551222,LOC107723073,LOC107601676,LOC107704101,LOC107751884 coding CM030136.1 CM030136.1 18172131 ~ 18182627 (-)