CI01000016_11866962_11874982 (PAPD7)


Basic Information

Item Value
gene id CI01000016_11866962_11874982
gene name PAPD7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11865984 ~ 11874982 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_11866962_11874982.mRNA
GACGACTTGGTCAGTTAGGAATGAAGCAGATGCTTTCCAAATCAGTCCAAAACGTTGCAAAAGCTATAAACCTCTTTGGAAAACATGGGATTACAGAAGGTGTGCCCAAGGAGGTGCAGTTGTCTGCTGTCTATGCCATTTATGACCTGGCACCCTGCAACCCAAAAGATGCCCTGGAGGCTCTGGCATCATGGCGAAGTGAAACCACACAGCCAGTCCCCTCTGCAGTGACCAGCTGCATCACTCAGATCGGCTCCCTTTGTCGAGATTCCGAAAGTGACAGTCCGACATCAGATTCATCATCTACTACTGGTGATGGTATGAGGGCAAATCCAGCCAAACTTCACTTTAACTTCACTGAACATATGCACAATGTCAATAATTGTTTACAACAACATTATCAGCGGCTACAGACTCAAATAATGATGGATAACCAGCTTAAAAACCATGCAGGACTAAGGAAACATGACAATAAAGCGAGCACATATGGATTGAACTACTTTCTGTCCCACTCTAATGACAGTTATTTAAGTGGGACCCCATGGGCAACCAGAAGATACAGTCTAGGTATTAATGGATGTAATAGATTGGCATCCCTGATGCAGGGCTGTATTGGTTCGTCATTTAGACTACGGAAATATCTTTTGATTCCAAACTTAGAGGGTCACAGGGTTTCAGAGCATCAAAAATTAAAACTGAATAAATCTTATTTATTCACCCTCATGTTCCAAACCCAATTCACAGTGGAACACAAGGTCTTCAATAGGAAGCAAGTTGTTTTAAGGATTGTGATGTTTATCCTCCCCAGCCTGCATGAGGAGATTGTGGATTTTTATAATTTCATGTCCCCACGCCCAGAAGAGGAAGCAATGAGGAGAGATGTTGTCAATCGTATTGAAGCTGTAATCAAAAATCTGTGGCCTACAGCAAAGGTTGAAATATTTGGCAGCTTCAGTACAGGACTCTATCTTCCTACCAGTGATATTGACCTGGTGGTGTTTGGAAAATGGGAACAACCACCTCTGCAGCAGCTGGACCAGGCACTCAGGCAGAATAATGTTGCTGAGCCCTTCTCCATTAAACTACTTGACAAGGCTACGGTACCAATAATTAAGCTGACTGACAGAGAGACAGATGTGAAGGTAGACATCAGTTTTAATGTCGAAACTGGTGTCAAAGCAGCTCGGTTTATTAAGGATCATCTTAAGAAATACTCCGTGTTGCCATACCTGATCTTTGTGCTGAAGCAGTTTCTGCTTCAGAGAGATTTGAACGAGGTGTTTACGGGTGGTATCAGTTCCTACAGCCTCATTTTAATGGCCATCAGCTTCCTGCAGCTCCATCCCAGAATAGACTGTAGAGCTTCTAATATTAATTTGGGCATCCTACTCATCGAGTTCTTCGAATTGTATGGACGGCATTTTAACTATCTGAAAACAGGCATCCGTGTGAAGGATGGAGGAGCGTATCTGGCCAAAGAGGAGATTATGAAGGTCATGGAGAATAGATACAGACCCTCAATGCTCTGTATTGAGGACCCAAACTTACCAGGAAATGATGTTGGCCGGAGCTCTTATGGTGCCATGCAGGTGAAAGAGGTGTTTAACTATGCATACCTCGTCTTGAGTCATGCTGTATCTCCACTATCGCGCTCCTACCCCAACAGAAATATGGAAAGCACATTGGGACGCGTCATTAAAGTGACCCAGGAAGTAATTAGCTACAGGGAGTGGATCATTCAGCAGTGGGGAAACAGACACAATGCCAAGATGGTTGACATTAAAATCCAGAATGGTGTAGAAGACTTGGAGCAGACCTCAAGTGAGGAGCAGCAGAGAGACTCCTCATCACCGCACAGTGCAGGCTCACCTGTGTCCCTATCCAGCCTTCAGCAGCACTCTTCATCATCTTCCTCATCTTCCTCTGTGTCCTCGCTGTCTGGGAGTGATATTGTAAGCTCCTGGTGTAGTTTCTTGACCGTACAAGAGAACTCATTAAAGGCACATGTCAGCACACTTCTGCATTAAATCCATTGAGTCAACCATTCAAAACCATAAAGTTTGCTGTCATTTACATTGGCTTTGTAAACTGCCATTTGAGATTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGATTCTGACACACCGTGCAAAGCTTCAGTTCTTCATGATGCATCTGGAACTTTCCTGCACTCCAGAAGTCAGGTAAGGCCAACATTCCACTGATTTTTATTTAATTTGCAGTCATTAGAGAATGAGAGTCAATGGCTGCGTCCGAAAGCTTAGGCAACTGACTTGCTGTCTTGCTTCCCTATCAGCGTTTGTGAACGAAGGCACCTCACGAAACGGGGGCCGTATTCACAAAACATTTTATCTTAACCACTAAGAGTTCTTCTAAATAGCAGTAAAAGTTCTTAGGTAAGAGTTTCCTCTTAGAACCAATTCACAAGGCTGCTGAGACTAGCTTTTACGAAGGAATGGGGAGAAATCTTAAGCTAAGAGAAAGGACGTGGTTGACCTCGTTGCTTTGGATGTCAACACGCTTACTAACTATGCACACAGTGACTGGCTGATAGGAGATGGGTCTCTGTCAGTGATTTAATCATAGAAATATTGTAGAACAAGGTACTGTGTTGGCATATTCAATTAAAGATTTTAAAATAAAAATGTTGCTATATCTAAACAGATTTTAACCTGCAGGCTAAGTGTCACTAATTAAACAAGTATATGTTTAGCTAATTGTCAGCCTGAATCTTGAGAGGTTGCAGAATTCAAGTCGGGATCTGGAAAGGTCCACAAGCCGGAACTCAAACTCAGGTAACCTGAGCTGCCCACAAGGCTATTGGCGCAGACGATAGGACATTATTTTCAACTTGACTGCAATGGTTTATTCTTCATCATTTAATGCATATTGCCTGTACATAAATGAACCTTTTATATTATGTCATTAAA

Function

GO: NA

KEGG:

id description
K03514 PAPD5_7, TRF4; non-canonical poly(A) RNA polymerase PAPD5/7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_11866962_11874982.mRNA True 3005 mRNA 0.43 13 11865984 11874982

Neighbor

gene id symbol gene type direction distance location
CI01000016_11670870_11794943 ADCY2A coding downstream 70901 11670818 ~ 11795083 (-)
CI01000016_11353238_11464979 TRIO, TRIOB coding downstream 401005 11352733 ~ 11464979 (-)
CI01000016_11167265_11226409 COBL coding downstream 639575 11167265 ~ 11226409 (-)
CI01000016_11161373_11165449 NA coding downstream 700535 11159368 ~ 11165449 (-)
CI01000016_11034620_11091604 GRB10B, GRB10 coding downstream 774380 11034620 ~ 11091604 (-)
CI01000016_11876020_11896223 ICE1 coding upstream 510 11875492 ~ 11896223 (-)
CI01000016_11908468_11923802 PRPF3 coding upstream 32745 11907727 ~ 11925765 (-)
CI01000016_11938043_11946368 NA coding upstream 62465 11937447 ~ 11946561 (-)
CI01000016_12116368_12123187 NA coding upstream 241320 12116302 ~ 12123298 (-)
CI01000016_12137876_12146233 NA coding upstream 262792 12137774 ~ 12147884 (-)
G100490 NA non-coding downstream 51882 11748189 ~ 11814102 (-)
G100488 NA non-coding downstream 80428 11762108 ~ 11785556 (-)
G100625 NA non-coding downstream 235826 11629855 ~ 11630158 (-)
G100621 NA non-coding downstream 238560 11627188 ~ 11627424 (-)
G100619 NA non-coding downstream 242754 11622980 ~ 11623230 (-)
G100669 NA non-coding upstream 25660 11900642 ~ 11900861 (-)
G100670 NA non-coding upstream 26124 11901106 ~ 11901345 (-)
G100679 NA non-coding upstream 72239 11947221 ~ 11947828 (-)
G100701 NA non-coding upstream 107094 11982076 ~ 11982307 (-)
G100712 NA non-coding upstream 124718 11999700 ~ 12000027 (-)
G100190 NA other downstream 1813595 10051168 ~ 10052389 (-)
G99178 NA other downstream 2051029 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 2353556 9509622 ~ 9512428 (-)
G98691 NA other downstream 2608373 9256102 ~ 9257611 (-)
G98679 NA other downstream 2626055 9234996 ~ 9239929 (-)

Expression


Co-expression Network