CI01000016_11876020_11896223 (ICE1)



Basic Information


Item Value
gene id CI01000016_11876020_11896223
gene name ICE1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11875492 ~ 11896223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000016_11876020_11896223.mRNA
AGAAAGCAGCAAACTGCACAGACAGCTGGATGAGGTGCTACTGAAGCTTGAGCCCTTAGAGAAACAAACAGTGCAGTATGAACAGATGAAGACAGAGCTGGAGAATGTTAAGAGCAGAAAATCCACTCTCACGCAGTGTTTATCCTTCTCTATTCCCAGGAAAGAAAAAGCTGAAGAATCCTTAAGACAAGCAGAGGACACTGTGCAAAGGCAAAATCTAGAGAATGAGAAGCTCAAAACAGAAAAGAAATCACTGAAGGAGGATCTACAGAAAACTCAGGTTAGGTTCTTTGAAGTTACCTCCGTGATTAAAGCATTGCAAAGGCTGAACCAACTTGAGAAGGAGTTCAACAAAGATGCGGAGAAAATAATTGATAAAGGTATGCGTTGTTTAAAACTGTTAGATTCTCCATTGTTCAATTATATGCTTGGATATTTAAAAGAACATCTGGAATGCATGGCAATTGATAATGTTTCCTTATCAGGCAAAGTCAGAATGCTGCTGGAAGAGCTCTGGCATTGCGTGGAAACTTCATCCAAAACACAAGAAAATTTGTTCATCGATGGAGAAGAGGCAACACCCTTGAAAAGCGAACTTAAAAGAGTACCTTCTCAGCCACTGCTTAAAAGTCCTTTAGGAAGACAGATTTCCCATCCATCTCCAGGGAATCCCAGTCCAGAAACTCAATTACAATCTTCAAAACACTCCTCACCTAAATCACCTCCAGCTATCAGTAGGCCTAAATCATCACCTCAAAATCTGAAAAAGCAGAAAAAAGAACAACTGTTCAGTATACCAAGTAGAAAGAGGAAAGTAAGTTCAGATAGGCTTGAACATGTGAACACTTGGACTGATGATGCTAATAGATCTTTGCTAAACGAAATGACAGATGAAGACTTCTTACATGGAGATTACTGTATGGATTTGCAGGGCATTAAAGAGTGGTTCAAGCCTTTGCCCACAGCTTTATCACCTGTGCATAGCCCCTCAGTAGAGCTGCTCAGTGTGAATGACGACCAACCAATGTCTGATACTGAACAGGAATATCAATCAAATAATGGAAAACCAGAAGCACTGTCAAGCTTACAAGAAGATATTCTTCAAAACAACACAAAATTAGAACCCTCAGATATTGAGGAGAAGTCATTGCTAAAAGAAGTGGAAAAATCCTCTGTAATTTTGTCCCCAAACACTCATGCAAGATTAGCTGTGTCTGTTGATAATTTAGATCTTGAAAACCCTTTGTCTGACAGCCAACACATGGAGGTAGAGTATGTGTTTGAAGTAACGCATGGCTGTGAAGCCAACACTCAGAATCAAACTGCAAAGTCAGGTATAGAAAATGGACACAGTGTGGAAAGTTCCTTAGAAAGTGATACCACACAAACTGTGGTAGAGCTTCCACTGATGAATCAGAATGGTGACAGAACACAATTGGAGGACACAAAAATCACTAATAATCTTAAAAATATGTTGGAAAACTCAGATCCTCAGCAGGATATAAAATCTGAGATAGACACCAATTCTATTGAATCTGCAGAAAGCAAAACTCAGGTACAGCCCAACGTGACATTGGAAGCTAATGTCAAGAGCGTTTCAACACTTGATGTGAATAATAGTAAGTTAGACAGTATTGACAATAAGGAATCAAAGAGTTCTGTACCACTAGAAATGAAGTCTGAAGCAGATATATCAACACATGACATTCAGAACAGACTAGCTGACAAGGCTGGTCAGGCTGAAGATGGTGCTGAGGATAATGGTTCAATGCCTGCAGAAGATCAAAAAAGTTTGTATGCAGGAGAATATGGAAGTGCATCCCTTTTAAGACCCTCAAAGGCTGAAGAATCATCATCAGAAGATGAAGGATTTTTTGGTTTGAAGAGAAAGGTTAGGGGTGTTCACTCAAGGTCAGAAGGAAGAATCCCCTCAGAAGAATTGGACAGTGTTTCTGGGAATAAGCAGTTTTCCACTGCAAAGCAAATGTCCAGAGATGAGCCTCAGGAATTGCTTTCTGAGAATGAAGCACTAAGTCACTCTGGACTTTCCACAGTAATCATGCATTCTGAGGATGAAAGAGATTCTGAACAGCCAGAAAAGGACAAAACTGTTCAAAATGTATGCAAGTTACAGAGTCAAGAAAATAACCCTAAAGATAGTGAAGAAAATGATTCTGCGATCCCAAGAAAAACATCAGAGCAAATAAATAATGAATCTCAGCAGGCAGAGGAAATGTCAACTGATGCCTATAGCCCTGGTGTCAAAAATTTGGTCAGTGATGTTTATAACCACAAGGAAACATCAGGAGATTCTGCAGTGGGTAGTCTTGAGGATACCAGCGCACCATGCCAGAGTACTCTGGATGCAGAATATTCTACCTTTGAAAAAGGTGAAAACATTTCACTTGTTCCAGGTCTCCACACCAAAATTCATATTACACCAACCTCATGTTTATCTCTTGGAAGGGTTCGAACAGAGATGGGTCCACCCCTCCCTCCAGTTGTTATGCCACTGACTGCTACTCCTCCAAGGTTTGGAAAACATCATACTCCTTTAAAGCCTACTTCAGTATCCTCAGGATTACCAACAGATGGACCAAAGTCTCCTAAGATGATCTTGTCGGTGCCTGTTATTGATTCAGCTCTTCCAGATGCCTCAAAAATGTCTCCATGCTTGACCACTCCATCGCCGTCTTGTGGAGTTCCCTCCTCACCACTTCAGTTTGGATCAGCTACTCCAAAACATGCTGTTCCAGTCCCAGGAAGACTCCCATCATCTGCCTTATCCTCCTCTCCTCCTGCTACTTCTCAGGAAAATTCCATGCAGATGCTGGATACTATGTATCCTGACCTCTCTGCACGAGCCCGCACGTTAAACATACTCCGTGGGAATGTTAACCTGAACCGAGCTGGCAACGAGAATGGTACCTCCCCTCCGTCTGTTAACCAGATATCAGGAAATAAAACAATCAGTTCTTCGTCTACTGCCTTTACCAAAACAGAGCAGAAACCAAAAAAGACAGGAGTGAACATGCTTTTGCCAAAGAGTGCTAAAAGACTCAGACTTGATAACTGCTCTCCTGCTCCTCCTGGTGTTGTTTTTACTGCAGAACAAGTAAAGGATCATCAAACGGTTATTAAAACAGAGTCCCTCAAATCTCGCCAAGAAGTACAAAGCAATCAGCAGAAAGTTGAGAAAAAGCCAGACAACACATTTGACAAAAATTGTCAGATCTCAGAAGCACTGGCCAAAGTTGGAATGTCCTGTTTTGATGTTTTGCCTGTTGTTAAGAGTCATGTGTTCCTTGGAAGAATATCTCAGGTGCCAATTTTGACTGATGAAGAAAAGGCTGTAATTGCTGATTTCTGTGTAAATCAGTCTTCAGCAGAAAAGCTCATGTCTGCCATCTTGACTAAACTAAAGACTGAGAGGAGCATTCTGAGTTGTGAAAATATACAAGCTCTGTGTAGAGTCTACACCGGAATATGTCGCCAGATAGGGGACTATCAGAAAGCCCATGCCTTTGCATACAACATCCTCAAAGAGGGCTCTGATGGCTGGAGCTAACAAACTACCATGATTCATTCCATTACCAATAATTATTACAAAACCTATAGATTCTGTAATTTCCTGCCTGACCATGATATTTTTTCCTCTAGGCATCATATATATAAAGAAAGGACACACAACAGTATAATTGTGTAACTTTTAATTCAATGCATGAAACTAATAATTTAAATAATTCAAGTTGCATTTTAACAGTTGTCCCTAATATTTCCTAGAGTCCTCCTGATGACATCCATAAATTGATCAGCAACACACTGAAGGCACTTCAAGAAGACAAAGCTTTGACATTCCAAAAGCAAGATCGTCATGGTCACGACCTTTGCCCAACTGCTTGGGAATATATATATACCTTGGATCTCTTGTGTACACATATGAAGTGGAAGTGGACGCATGATTATGTTATTGGGTATATTTATTAACCAAGTACAGAATGTTAAATAATTTAAAAGAATGGATAATCAGTATATTCATAATAATATATAGAGTGGATAATTAATATATTTATCATGACTTTTTTTTTTAATTAAA

Function


symbol description
ice1 Orthologous to human ICE1 (interactor of little elongation complex ELL subunit 1).

NR:

description
Kiaa0947l protein, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000016_11876020_11896223.mRNA True 4096 mRNA 0.40 10 11875492 11896223
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Neighbor


gene id symbol gene type direction distance location
CI01000016_11866962_11874982 PAPD7 coding downstream 510 11865984 ~ 11874982 (-)
CI01000016_11670870_11794943 ADCY2A coding downstream 80409 11670818 ~ 11795083 (-)
CI01000016_11353238_11464979 TRIO, TRIOB coding downstream 410513 11352733 ~ 11464979 (-)
CI01000016_11167265_11226409 COBL coding downstream 649083 11167265 ~ 11226409 (-)
CI01000016_11161373_11165449 NA coding downstream 710043 11159368 ~ 11165449 (-)
CI01000016_11908468_11923802 PRPF3 coding upstream 11504 11907727 ~ 11925765 (-)
CI01000016_11938043_11946368 NA coding upstream 41224 11937447 ~ 11946561 (-)
CI01000016_12116368_12123187 NA coding upstream 220079 12116302 ~ 12123298 (-)
CI01000016_12137876_12146233 NA coding upstream 241551 12137774 ~ 12147884 (-)
G100490 NA non-coding downstream 61390 11748189 ~ 11814102 (-)
G100488 NA non-coding downstream 89936 11762108 ~ 11785556 (-)
G100625 NA non-coding downstream 245334 11629855 ~ 11630158 (-)
G100621 NA non-coding downstream 248068 11627188 ~ 11627424 (-)
G100619 NA non-coding downstream 252262 11622980 ~ 11623230 (-)
G100669 NA non-coding upstream 4419 11900642 ~ 11900861 (-)
G100670 NA non-coding upstream 4883 11901106 ~ 11901345 (-)
G100679 NA non-coding upstream 50998 11947221 ~ 11947828 (-)
G100701 NA non-coding upstream 85853 11982076 ~ 11982307 (-)
G100712 NA non-coding upstream 103477 11999700 ~ 12000027 (-)
G100190 NA other downstream 1823103 10051168 ~ 10052389 (-)
G99178 NA other downstream 2060537 9814361 ~ 9814955 (-)
CI01000016_09510177_09512196 ID4 other downstream 2363064 9509622 ~ 9512428 (-)
G98691 NA other downstream 2617881 9256102 ~ 9257611 (-)
G98679 NA other downstream 2635563 9234996 ~ 9239929 (-)

Expression


CI01000016_11876020_11896223(ICE1) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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CI01000016_11876020_11896223(ICE1) Expression in each Bioproject

Bar chart with 44 bars.
CI01000016_11876020_11896223(ICE1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009700 ice1 coding NC_007127.7 CM002900.2 9400661 ~ 9420358 (+)