XLOC_000794


Basic Information

Item Value
gene id XLOC_000794
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56939347 ~ 56944389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003252
GGCTTTCCTCTCTGCGGGTCCAGTACTGCACGGACGGCTTCCTCAAACACTGTTTTAACCCCCTTCAGTGTTCTTGCTGAGCACTCCACATACTTCACAGCTCCTATTTCTGCAGCTTTAGCCAGGCCTCGGTGGAAAGAGATGGGGGTTTGTTTCTTCTCTTTCAGATGTTCAATGGTCTCCTTGTCATTTTTCAGATCAAGTTTAGTCCCGACTAGAACTATCGGAGTGTTTGGGCAATGATGTCTGACCTCTGGAAGCCACTTTTCACTGACATTCTCAAATGACTGCGGACCCACACAAGAAAAACAGACCAAAAACACATCCGTATTAGGGTAGGAAAGTGGACGAAGTATGGTATAATCCTCCTGTCCTGCTGTATCCCACAGTCCCAGAGCCACTGCATTCCCATCAACCACCAAATCGACAGACAATTTATCAAACACAGTGGGGACATAACCATCCTGACATTTACCGGTGGTGTAGCTGAATAATAATGCTGTTTTTTCTACAGCCGCGTCGCCAACGACAACACACTTTATATTCTGCATTTGTGTAGCACATAACCCTGTAAACACCAATCTGTGTCAACAATTGACTCAATAAATGCTGCTCTGACTGCAACAAACAAATGTGAAGTTCATAACTCTTAATGTCGTATTTTGCTCTCAAGTTGAACATTGAAATGGTTTGTCCGACTGCATGCTGCTTCACACTCC
>TCONS_00003253
GACGGCTTCCTCAAACACTGTTTTAACCCCCTTCAGTGTTCTTGCTGAGCACTCCACATACTTCACAGCTCCTATTTCTGCAGCTTTAGCCAGTTAGCCAGGCCTCGGTGGAAAGAGATGGGGGTTTGTTTCTTCTCTTTCAGATGTTCAATGGTCTCCTTGTCATTTTTCAGATCAAGTTTAGTCCCGACTAGAACTATCGGAGTGTTTGGGCAATGATGTCTGACCTCTGGAAGCCACTTTTCACTGACATTCTCAAATGACTGCGGACCCACACAAGAAAAACAGACCAAAAACACATCCGTATTAGGGTAGGAAAGTGGACGAAGTATGGTATAATCCTCCTGTCCTGCTGTATCCCACAGTCCCAGAGCCACTGCATTCCCATCAACCACCAAATCGACAGACAATTTATCAAACACAGTGGGGACATAACCATCCTGACATTTACCGGTGGTGTAGCTGAATAATAATGCTGTTTTTTCTACAGCCGCGTCGCCAACGACAACACACTTTATATTCTGCATTTGTGTAGCACATAACCCTGTAAACACCAATCTGTGTCAACAATTGACTCAATAAATGCTGCTCTGACTGCAACAAACAAATGTGAAGTTCATAACTCTTAATGTCGTATTTTGCTCTCAAGTTGAACATTGAAATGGTTTGTCCGACTGCATGCTGCTTCACACTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003252 False 719 lncRNA 0.45 2 56939347 56944389
TCONS_00003253 True 695 lncRNA 0.44 2 56939379 56944389

Neighbor

gene id symbol gene type direction distance location
XLOC_000793 si:ch211-152f2.4 coding upstream 6769 56929873 ~ 56932578 (+)
XLOC_000792 si:ch211-1f22.9 coding upstream 17187 56919742 ~ 56922160 (+)
XLOC_000791 si:ch211-152f2.3 coding upstream 34537 56900580 ~ 56904810 (+)
XLOC_000790 si:ch211-1f22.8 coding upstream 45992 56886214 ~ 56893355 (+)
XLOC_000788 NA coding upstream 60713 56873097 ~ 56878634 (+)
XLOC_000795 si:ch211-1f22.10 coding downstream 10960 56955349 ~ 56960001 (+)
XLOC_000796 si:ch211-1f22.11 coding downstream 28227 56972616 ~ 56981521 (+)
XLOC_000797 si:ch211-1f22.12 coding downstream 47873 56992262 ~ 56996143 (+)
XLOC_000798 si:ch211-1f22.13 coding downstream 59789 57004178 ~ 57008386 (+)
XLOC_000799 si:ch211-1f22.16 coding downstream 96083 57040472 ~ 57045514 (+)
XLOC_000783 NA non-coding upstream 39059 56819153 ~ 56900288 (+)
XLOC_000787 NA non-coding upstream 81882 56851035 ~ 56857465 (+)
XLOC_000785 BX927068.1 non-coding upstream 105345 56830798 ~ 56834002 (+)
XLOC_000781 NA non-coding upstream 131745 56806134 ~ 56807602 (+)
XLOC_000801 NA non-coding downstream 171876 57116265 ~ 57120505 (+)
XLOC_000809 NA non-coding downstream 269904 57214293 ~ 57214954 (+)
XLOC_000815 NA non-coding downstream 464278 57408667 ~ 57436117 (+)
XLOC_000816 NA non-coding downstream 474959 57419348 ~ 57433416 (+)
XLOC_000818 NA non-coding downstream 596727 57541116 ~ 57565236 (+)

Expression


Co-expression Network