G93802


Basic Information

Item Value
gene id G93802
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 132552 ~ 138874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU106731
GTCATTTGGATCACTTTATGGTACTTTTATCATGCTTTTGCATCATTTTTGCAGCTTGAAATCTCCAGTTCCCTTTGTAATTATATGGAAAAGAGCGACCAATTATATTCTTCAAAATGTGTCGTTTCATGTTCCACAGAATTAAGAAAGACACAGATTTGTATCTTTAAAGATTAGTAAGACTTTGCTTCCAGGTGCTTCTAAAAATAAAAACATAAATACTAGGTAAATACAAATGTCAGTATTTTGTGGTTTGCGCTCAAGATGAATCAATTTGTAATGCATATGTACTTTTGTTTGCATAAGCCATCACATTGCCTGGTTACACGAATAACAGACTCGTGACATGGGTTTGTCTATGTATTTACACTAGTGTGCACTTTATAGTGTTTAAAGATCAGGTATCTGTTTGTCTGTGTTATGCTGGTTTTGCCATTGTGCCTCAGCCCACTGTAAACACAACTCGAGGAATGCGTCAAGTAAAACTGCAGTGTGAGACCATTGAGCTTCTTTAAGTGAGAGCTACCTGCCTCTTGACATAGTACAGTCTGTTCTCAGCTGTACAGTCTGAGGTTTTTTGTGTCGGTGAGCAAGAGAGTGAGAGAGGGCACATTTTCGTTCGTGCCAACTCACACGTGCCAGACTACAAGAATGACCTAACTACACGCCTGCTAAATAACAACAACAGATTTCATAACCGACTAGTTAGCATCCTCTCATTTTTCCTTCTGTTATCAAATAGATGAGGTGTCATTAATATGCTAAAATGAGGAGTTGCGGGTGCAATGCAAATATTTTTAGTCATAATTATGCCTTGCTGGATGTGAAACTGTATTTTTACTTTTTAGGGCCCGAGCACAGATGGTGTGAGGACCCTATTGTAATTGCTCAGTCAGTTATTCTTCTTCTCCGAAATGAATCATGTGCAGTTTTTGCCATTTCCAGACGTTGTACTTTAACGAACTCCTCCTAGAGATTTTATCAGATAAATATCATATTTGGTCAGTCTAATTTAAAGGCCTTTGTGATGTTAAATTGCAAAGATCTTGAGTTTTCGTTGAAGGGTGTGTCTGTGGCGGCCTGACAAAATTCGATGTTTCGCCATGAAACAGGAATTTGTTGTAACATGGGCATACAATCTCGGATCTGCTGCAAACTTCACATGTTTGATAAGAGTCCTGGCCTGAAGACATCTACATGGCAATATTCAGTTACAGTCATAGCGCCACCTGCGGGCAACAGGAAATGACATGTTTTACACTGTGATTAACTTCTCATAGAGATTTAATCAGATCAACATCATATGTTGTCAGTCTAATCTTAAGGCCTTAGCAATGTTAAATCTTGAGTTTTCGCTGAAGGGCGTGTCTGTGACGGCCTGACAATTATCCAAATTATGAATATTCCACATTCTAGGGTTTTGGAGAAGAAAAAACTTTAGCCATCCTAGAGAAATCTTCATTTTTCACTGAGGAAAAAGTTCATAGCGATTAGCATGTCTTTTGATTTGAATCGAGTGTCTTTTTTATAGTAATGTTAATGATATCATTCTTACAATTTGATTTAATCAATTTTATGACTCAAATTGCATACTTTACGATTATGTGCTATATTAAGAGAAGATCTTGCTTTAAATAATTTAATCGGGTGTCGTTTAAGAAGTAGGCCTACAACTCCAAGGAGCATCATTCTTGGTACCTACAGCACTTACACTTAAAAAGTATATAAGCCTTTTGTCTTTTTTTTTTTCTTTCCCTCAACTTTTTGAATCTGACAGCTTCTCAGCTCTTGTGGCCTCATGGGATAGCACAGTGTCCACTAGCTGCACACTTTCAAATCAGTAGATCATTGTTATTGTTAGCCTTTAGTTCCATGAGTGCTACTTATTCAGACATCATACTCTTTTTACATAGCCTACTGCTTTTCGCATGCTTTATGGTAGGGAAGTATGTCGTAAGCATTTTATTTACTTGCTAAGGCTAATTTTTAACACATTTATTCATATTATAGTTAACACAATAAACTGGTAGAAATTTGACAACTGGCAGAAATTTTGGATTATCGTTTTTAGCGCGGTTACGGTCATGTGATGTTTCAGTGTTGCGTCGTAACTGTTTATCCTATTTTTAAAAAGCTTTGCCAGTTTAAATGTTCAAACCATGAAAGTGCAATAGGACGCTGTTCTGACAGGCGGTTTTCTATGTGCACACCCAAATTTTTTTCTGTTTTTGAATCTTTGTTCTATTGTATTTAATGTCCTATTGCATGCATTTGGTTTCTTTGTTCTTATTTTATTGCTGACTGTTAACTCGTCTTCAGTAAACTTGAGCCTTTTACTTGTATTGTATTGTGTGGAATGCATATTTGTTAAATTTTAACGTCATTATAAACTTCTTTATCGTAACATCTAGGGCTGTGACGGTCGGCATGACAACCGCGCCAGTGTGGAGTTGCCACCGCGGTCGTAGAGTGTCACCGGCGGTAGTGTGACGTGTATATATATATCTCAGAGGTCGCGTTAACCTAAATTTTTTTTTTTTTTTTTTTTTTTTAGCAGTGACTGCTGAAGCAAAATCTGAAGCCCGTCCGTCATTTTGACAGACTACTGAGGCTGATGTAGGTTGTAAATGTAATTCCCACCCCTGTCCAGTTGGTGGTGAGTGCGTCTGCAGAGCGCGAGTTCAGTTTCCAGAATAAAATGATGCGTTTGATTACACACAGGCGAGCACCCAGTGTAAGTCCATTTTATAATAATAAAGTTATAATACTTACACTTACATAATTAAGTTTCTAATCCAGTTCGTTTTGTTTTAAATAGTTCGTTTTGTTATTTTCTTGCTGACTATCAAGTTTATGGTCAACGAATGGCTTTTCTGAGGTAGGCTATAATGTTACGTGACATTGTTTGCAACACTGACTGAACTGACGATTTCGGTAAGCTACTGTGTTTTTCAACATTTTTTCTGATTTTCATTCATGTTTATTTCGTTCTGTAAAGAGGAAAGGATGATCGCGTTCATTCACGATCCGTGACAAGTGTTCAAGATGAAAACTGGAAACTTTCTTTTCATAGTATAAATAAATGCATAGCCTACGCATATTTACTTATCCTGTGAATTCGTAAATGAAAATGTGGACGAAATCAGAAGCTATTAAATGTCTTATCTTTAAAATATAAAAATTAAAATGACGGGTAATAATTAATTATGACGGATTTTTTACTGTCCGCCAAAAGTGCGAAAGTCTAACGCAAGCTCTGAGATATGTGTATGTGTATATATATATATATATATATAATATATATATATATATATACACATACAACCAACCCCCCTCCCCCGGACCCCACCACCGCAACACCGGCGGTTGTTGGTGATTTCCCACCGCGGTAGTAAAAAATTGCCACCGTCACAGCCCTAGTAACAACCTTGTTTCCAGCAAAAGTAACTTGTGATATATGTTGTTATCTTGAAATAAAATGACTCATATTGTGATATGATTTTGGTCATATCGGCCACCCCTAATAGTTTCTCAGTATTACTGAACCATAATAACGTAGCTAATGTTATTTCTGTAGAGGCTAGCAGTGCGTATAAATGCTGTTAGATTTAACAAACTTTTCATCTGAGCTAGATTGGTGCTCATGTGGAAACATTCAAACCCTGCCTGTATAATGTCCCGATCCTTTTCTCTCCTTTACTTTTTTTTTTTTTTTTAATAAAAGTGGCAAAAAATAGAATAAAAACACTACTGTTTATTCTTAGAATAATTGATACCCCAATTTTTTTTCCCCTGCTCTGCATGAACCACTTTACCTGTAAAACAGAATTTTGAATGCACTAGCTCATTTCCTCTGATTCACCCCAAGATCCAATAATGGCCCGCGCTGCATTACGCAACACCCGTGTGGTATTTCAATGGACAGAAATATTCTGACAAACGAACGCCTACTCATGTCTCTGTTCTGCTTCTCTCACAGTTCATCTTTCTACAACAGCAGCTATTTTCAGTGCTGCCTTAATATCACATTGTATGGCATGAGCCAATGGAATGGATGTTAGCTTGTAAACTGCCCGCCATTAGCGTCAAATTCATTGCTATTCCCTCAGGCCAATGAAGATAGGGACCCGATTTGATATCGAGCAGAAGTGCTGCATATCACAGCCAATCAGTGATAATGCCAGATTTATTATTAAGACCTTAAATTGTTTCATCACGTGTGTTTTCAGTGCGTCATAGCCCTATATACATACCAAGGGTTGTAGCACTCCTCCAGGTGAATGTTTTCATATGTGTAGCAAACATTGAGCTGGTAATCATGTTCCAGACCTGCTGTTTAGGCCTCATGCTGTGTCTGGTTTACATCTCTGAACGGTCTCCACACTGTGGCGCTGCAGGGACCCTCAGGAAATCCTCTAGACCCCTAGGGACGCTTATGTGTGCCCCCCGTTCTACCCACTGATGCAAAATAAGCTGCTGTAATTGGGAAAATAAACAGTAGATTAATGCTAGACCATGTGGCATTGACTGTGTGTTTATAGTAAGCTGCTGGATATGAAAAAGTCTGTTTGTCACCCTGTGTGTGACGTTTGTATAAGTCAGGTTTTGTGAATGGTCAGACTCCATCTCTGAGTAAAACTGTACCCATGTCACAAAAATGCAAAGACGTGTAGTGATTTTGTTCCTCATGTTTTCATTTTGGTGGCTGAATGAGGATTTATCCATGTTCTGGAGAAGCAAAACTAGTCATCCTAGAAAAACTTTTCTCATTTTTCACCAAAGAAAAAGTTGTTAGACATGTGAATAACAATTTTGTTCTTTAGTAGACTAGATCTGTGATTTTGGTCACTTGTTTGACAGAAAGGCTCTATGTTTGAAGACTGGGATATGATTGACAGAAAAAAAGAAAAAAAGTGGCAACAAGGCCTAGACACAAATTTCTTGACTTCCCTATTTTGATCACCAATGTAGTGGATTTGATTCAGGCTAGTGTGTTGGGAAAGAAAGTTTCACTAGGTTAAAGTGGCTCTTTCTGCTGATTTTAAAAAACAGCTTGAACCAATCTATGCTGGTTTCCTGCTCTAAAATGGCCATTTTTACATTGATATATTATATTTTCTATATTATATGATATACCACTACCCACCTAGTTTCAGTCACCTAAACATGTTGAGGATTGTTGGTCAAATATTAAATCTGAAACAGTTACCAGTGGTGTAAGTAGTTTCAAATTGGAAATAATTTCCTGCCAAACTTATCACATATATAAACTTATATATGTGAACTGTTATATGTAGTTTTAAGTCAAAACAGGCTTATTTAATTGCTTGAAATGTTGCAGCTTTGCTGCAATGTCATTGTGGGTTAAGTCCAACAAAGCACTTCAGTCTGATTTAAGATGTTTTTAAGGAGGACTAAAGACAAAATAGAGGATATGTCTTACCCATGTGCTTATTTTTGGCTATGACGATCTCACAAAAAATTGCACTAGTGGAATTAACACCATAAAATGAAGGAAAAATGTTAAACAAATGTCACACTTGTTTCAGGCGTCATCTGTGCTCTATCTTTACCTTACTGTGCTGATATTAAACTTAGCAACCTAAAATGAAATGAAAACCCAGACACACTTGCTAAACCAGTAACCATGGAAACACACTGGAAGTCTCTATAACTCTAACTGTTCCCACTTGTGAAAAATAGACTGTTTTGGAAGGTCAGTGAAGCACCAAGTTGAATGTTTTGGCAGCGATCACTGACTTTGAATAGGCTGAGCACTGACACAAGGCACTCGCTCGAGACTCTTGTTCCAAACCCAAAGCACCAGTGGCGTATTGAGCGAGCCTTGTTAATGACTTTAACAAGAGGAACAGACCTATGACTAGTTGTGAGTGTATGCTGGGTCAGCGACAGACCTTACAGTCTGTGAGGTGTAAAGAAAGCATGTCTGGCACAGTCCAGTCATTTACATTTGGCTCAGAAATGAATTTCACCCTGTTTCATTGGCCACTTGTGAGATTTCATGATCACACTCATGGTTTATGAGCTCTTGTGTGATGTAGCCCTGGAATGGCACCATGAACTCATTACAGGGTCAGTCTCACAGGAGAAGCCTCAGTTTAAGCGCAGGGAAAAACAGCATTTTATTTTACTTTTTTATTTTATTTTATTGTCCATTCATCCATTCTCCACACCGCTTGTCCCATGTAGGGATGCTCAACCCTATCCCAGCTTCTCAAGCTGAAGGCAGGGAAACATCCACACCGTTCCAGTGTTATTTTAGTATGTTTACTACTGTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106731 True 6301 lncRNA 0.38 2 132552 138874

Neighbor

gene id symbol gene type direction distance location
CI01000016_00099623_00100245 NA coding downstream 32307 98834 ~ 100245 (-)
CI01000016_00079894_00094596 HIVEP3 coding downstream 37956 78944 ~ 94596 (-)
CI01000016_00068703_00072323 NA coding downstream 59471 68658 ~ 73081 (-)
CI01000016_00012244_00028573 NA coding downstream 103979 11615 ~ 28573 (-)
CI01000016_00002941_00010117 RCC1 coding downstream 122435 2493 ~ 10117 (-)
CI01000016_00153934_00154312 NA coding upstream 15034 153908 ~ 155622 (-)
CI01000016_00166492_00172759 SERINC2L coding upstream 27211 166085 ~ 172759 (-)
CI01000016_00251025_00251471 GBP coding upstream 111344 250218 ~ 251486 (-)
CI01000016_00448107_00452861 CCNE2 coding upstream 308984 447858 ~ 452861 (-)
CI01000016_00456765_00460615 TP53INP1 coding upstream 315954 454828 ~ 461209 (-)
G93805 NA non-coding downstream 72957 59358 ~ 59595 (-)
G93829 NA non-coding upstream 49730 188604 ~ 189338 (-)
G93835 NA non-coding upstream 60284 199158 ~ 202946 (-)
G93873 NA non-coding upstream 142120 280994 ~ 281211 (-)
G93934 NA non-coding upstream 261619 400493 ~ 401772 (-)
G93954 NA non-coding upstream 370197 509071 ~ 509303 (-)
G94786 NA other upstream 2131962 2270836 ~ 2276275 (-)
G95070 NA other upstream 2846386 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3496733 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3726887 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4773834 4918975 ~ 4922518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G12627 NA non-coding NC_053112.1 CM020909.1 46938248 ~ 46938639 (+)
mexican tetra (Astyanax mexicanus) G12523 NA non-coding NC_035898.1 CM008301.1 22164761 ~ 22227150 (+)