G93988


Basic Information

Item Value
gene id G93988
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 574300 ~ 576181 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU106952
TTTAGATGCAGTCTTTGCGGTCGAACGCTGTTGTGATGTTCTTGCTCCGAATCAGTGTCAGAGTTGTGAGTGGGTTGATTTGTTCTCTTGCTGAATTTACGGCCATAATTTGAGCTCATTCTTGGGCCAAGACTTTCTGAAGAATGAAAAACAGAAAGTGCACATTTGTGCAAAATTGAAAGTTTGACCATTACAGAAATTATAAAACATTTCATGTTTATGACAAATATAAAAGTCATGTCATTTTATGTATATTAATCATTACAGATCCAATGCATAAACATTGAATCACTTGTTTACAGAAATTGAAAAATAATGTAGTTTAACCCATATTTTGTGAATTAAAAAAAATCTAGGACTGGGTATTGACACAAAATTCACAATTCGAATTCAATTAACAAACTTGTGATTCGATTCAATTCCGATTTCGAATCAATTTGATATGATATTGGTTAATTTGGATATATCAGATAAAGTATATAGCAAATTTTCTCAAGAGAAAAAAAATCTCTCAAATGCTGTAAACTATACAGGGAACCCTGTCAGTTGGTACATAACTGTAATATCAAAAGTTAAAATTAACTGAAGTGTATACAAACATTTAAATAAGCGGTTTTATTAAAGTCTTTCTGTGGTTGAAACACTGATTGAGCATACGAGACATTCAGTAAGTTGTACTGTTTTTTTTCAACATACCTTCTGATGTTTATTCATGTTTATTTGTGCAATAATTAGCAGTAAAGTGGAAGAGATGGTCAATTCACATGCTCTCCGCGCATCTCTTGAACGAATAAAAAAGTGATCCGTCATGCCACATTAAAAAGCTCCACAACGGTATTTATTGATTGAATTGCGTAGTTAAATTGACAACATTTTCAGTTAATCAAAATGAGAATCGATTAAAATCGACAAATTGATATGTACAAAATACTAATAATAGATATAATCAGTTATGAGGATATAGAAAAAAAAATGTTATAACACAAACCGTACTGATGCCCCCTGGCAGCCGGGACAATTTGTGTGTTATAGACTCCTATCTGTTCATTGGGCTGGTCCTCCAGGCTTCTGTAGGAACTACTGTGATGTTGGTTAATCACACATGCTGTTGGCAAAGAGGACAAAAAAGAATAGCTTAAACTCCCTCATGCAGCACTAAGCCTCTGCCTTAAGCTTTTGTATTGCTGTAGTAGCTAATATCAAAAGAAATATTTCACAAAAGGTTTGACTCTCTTCATATTCTATGAAAAAGCATTTCCTGTTATTTGAATGGAATGCACTGAATGCATACAGAAATTGGGCAAGAAGTGAGTACATTCATTTGAAGTTTATGCACAATAACAATAAAATATTTTTAAAAACCTAAGTGTTGTACTACTACTACTACTCAGAGATGTTCTCGAAGCTAAGCAATGATAAAAAATAACTACAAGTCTGTTTGTTATAGCTCAGCTCTATTTGCTCATTTCCATTTCATTTAGTTCTAAGAAAACTTGTAAATTATTCCTTTTCCAATGCCACTTTGATATTTTGTCATCTATCTATCTATCTATCAATCAGATTTTTTAATGTGAGTAAAGTGTCTAAAATAGTCTGAATATTGTTTGGCGGATATTATTTACTTTCTAACACCATATTAGAACATTTCAATGGCACTAATTCCAACAAAAGAAATGACTGATGAGTGCTTTTGAATATAAAAAGTGCTTATACTGTACTTGCCCTTTGCTCTTTTGAAATGCACACAGACAGCAGAATTTATCATAATAAACATAAACAAGGCAATAGATAAGATGATGCAGCCAATTGCTGCTGCTGAAACTCCACCGATGCGTTCTGTTGCTGCCACTGCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU106952 True 1854 lncRNA 0.33 2 574300 576181

Neighbor

gene id symbol gene type direction distance location
CI01000016_00513504_00514565 NA coding downstream 59556 512124 ~ 514744 (-)
CI01000016_00471859_00490955 NAGPA coding downstream 83345 470783 ~ 490955 (-)
CI01000016_00456765_00460615 TP53INP1 coding downstream 113091 454828 ~ 461209 (-)
CI01000016_00448107_00452861 CCNE2 coding downstream 121439 447858 ~ 452861 (-)
CI01000016_00251025_00251471 GBP coding downstream 322814 250218 ~ 251486 (-)
CI01000016_00581946_00586945 NA coding upstream 5685 581866 ~ 586997 (-)
CI01000016_00589778_00591095 METTL6 coding upstream 13491 589672 ~ 591294 (-)
CI01000016_00592794_00596916 NA coding upstream 15949 592130 ~ 597102 (-)
CI01000016_00601605_00607255 RSPO3 coding upstream 24441 600622 ~ 607255 (-)
CI01000016_00679328_00729780 NA coding upstream 102611 678792 ~ 729966 (-)
G93954 NA non-coding downstream 64997 509071 ~ 509303 (-)
G93934 NA non-coding downstream 172528 400493 ~ 401772 (-)
G93873 NA non-coding downstream 293089 280994 ~ 281211 (-)
G93835 NA non-coding downstream 371354 199158 ~ 202946 (-)
G93829 NA non-coding downstream 384962 188604 ~ 189338 (-)
G93992 NA non-coding upstream 3036 579217 ~ 579783 (-)
G94011 NA non-coding upstream 59986 636167 ~ 636370 (-)
G94017 NA non-coding upstream 68492 644673 ~ 644880 (-)
G94073 NA non-coding upstream 169491 745672 ~ 745975 (-)
G94786 NA other upstream 1694655 2270836 ~ 2276275 (-)
G95070 NA other upstream 2409079 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 3059426 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 3289580 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 4336527 4918975 ~ 4922518 (-)

Expression


Co-expression Network