Gene
RNA
| Item | Value |
|---|---|
| gene id | G93711 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 1913797 ~ 1942317 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| meprin A subunit beta-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU106614 | True | 339 | lncRNA | 0.44 | 2 | 1913797 | 1942317 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_01656995_01657299 | NA | coding | upstream | 255407 | 1656995 ~ 1658390 (+) |
| CI01000016_01588035_01601276 | RSPO2 | coding | upstream | 311888 | 1587070 ~ 1601909 (+) |
| CI01000016_01563821_01567070 | NA | coding | upstream | 346268 | 1562398 ~ 1567529 (+) |
| CI01000016_01509959_01560806 | EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA | coding | upstream | 352675 | 1509959 ~ 1561122 (+) |
| CI01000016_01476236_01476607 | NA | coding | upstream | 437035 | 1476236 ~ 1476762 (+) |
| CI01000016_01989129_01990437 | NA | coding | downstream | 46707 | 1989024 ~ 1990995 (+) |
| CI01000016_02000795_02079453 | ADGRB1, ADGRB1A | coding | downstream | 57892 | 2000209 ~ 2080896 (+) |
| CI01000016_02220464_02221013 | NA | coding | downstream | 278147 | 2220464 ~ 2221030 (+) |
| CI01000016_02235073_02261683 | CEP162 | coding | downstream | 292756 | 2235073 ~ 2262308 (+) |
| CI01000016_02337039_02343109 | POGZB | coding | downstream | 394722 | 2337039 ~ 2343109 (+) |
| G93624 | NA | non-coding | upstream | 359771 | 1496393 ~ 1554026 (+) |
| G93565 | NA | non-coding | upstream | 444442 | 1462117 ~ 1469355 (+) |
| G93567 | NA | non-coding | upstream | 451819 | 1461600 ~ 1461978 (+) |
| G93547 | NA | non-coding | upstream | 464203 | 1394698 ~ 1449594 (+) |
| G93598 | NA | non-coding | upstream | 464360 | 1421620 ~ 1449437 (+) |
| G93780 | NA | non-coding | downstream | 26221 | 1968538 ~ 1978432 (+) |
| G93777 | NA | non-coding | downstream | 97272 | 2039589 ~ 2045283 (+) |
| G93794 | NA | non-coding | downstream | 151635 | 2093952 ~ 2094182 (+) |
| G93779 | NA | non-coding | downstream | 162589 | 2104906 ~ 2105133 (+) |
| G94696 | NA | non-coding | downstream | 256691 | 2199008 ~ 2271134 (+) |
| G93406 | NA | other | upstream | 986265 | 905400 ~ 927532 (+) |
| G95439 | NA | other | downstream | 1919858 | 3862175 ~ 3862305 (+) |
| G95648 | NA | other | downstream | 2330319 | 4272636 ~ 4273905 (+) |
| CI01000016_04829592_04837305 | NA | other | downstream | 2892241 | 4829592 ~ 4837457 (+) |
| G95792 | NA | other | downstream | 3277563 | 5219880 ~ 5225941 (+) |
| CI01000016_05405791_05407797 | AICDA | other | downstream | 3463552 | 5405791 ~ 5407963 (+) |
