G93780


Basic Information

Item Value
gene id G93780
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1968538 ~ 1978432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU106696
GGTTCAGTGATGATGTCCCTCTTTAACAATGAGAATAAAAGGCAAACTCTCTGTTGTTGTTCTCTCTCCCTCTCTCTCAATTTTTCGAGTACTTAATTTGCCGGCTGTTGTAAAATCACACAATATATACAAAATAATAATAATAAGATGCCAGTAATTTTATTAAAATAGTCTAATATTTGCAATATATACAATATAAAGTAGGATACAGCAAAACATTAATGAACAATAACTACAGTACTGGCTCCTTCTTCTCTCTCTTTCTGTTAAACTGTCTTACCTCATGCTGCTTGCAATGTCGAAAGCATGCGCCATTACACACCGACAGTATGGAAACTTCTCGTTTGGGTAATAATAGATGTGGTTTGCTGGTGTTTGGCGGAGAGTTACTGACGGTGAGTGAGTAGAAGTTCCGTGTTTGTACAGTAGGGGGGACTGTGCCAGCGCTCAATTCCCTCCGTGGGAATAGGGGAATAAACGGCGATCACGGAGCAGGAGATGCCTCACTGCGCACTTTGAGACTCACGAGAGCCTCTGACTGCAGCACGCGCGAGTTGTGCCCGTCTGAAGCACACAGCCAAGCTCCACAACAACAGGTTATGATGTGCTCGACCTATGTCAAAACTATTTTACAAATATCTATAAAAAATATTTATAATATATATTTTATCAGCATCACCAATAATAGCAACAAGGATATGAATTATAGGAAATACAATTTAAAAATAAAATAATAATAACAGCTAGATTTGTTGCGGTGAAACTTGCTGCCAAAATCTTATATGCGCCTCTCTGTGGTACACTGAGGGTCCTTAGTACATTGGCCCAAGTCAAAAGAGCCCACCTCGATGTGTCTGTGATATTCTGGTGCTATACGGTTGCTAGGGTGTTCTGGCTGGTTGTTAGGGTGTGGCTAGGAAGTTGCTAGTGTGTTAGTGAAAAACCCCGCCTCCAAGTTTTTATTACACTATGATCTGAATATGATCCGTCTCATTTTCTCTTTTTTAATGCAACTCTATGGGATTTTAGCCTTTTTTTTCTTTTCTTTTTTTTGCATGCCTGATCGCTCTACAATAAGCTACATGATTTGAGCTCACATTATTATTATTATTATTACAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACTGAAGACTGGAGTAATGGGTGCTGAAAATTATTATTAATAATAATAATAAAACATTGCTTTTGCATTTCTTTCGGTATCATCACAGAAAATACGTCATCATTCTTAATATTTTTGGTGAAATATGCAAGTCACAATCTTTGTGTTAAATCTAAATGGCACAGTCATATCAGTTCTGCCCGACTGCCTCTTTTAGATACATGTCTTCCGTGAGTCTCCGGGGAGTTTTGAGCTTAAGAGGCACACATAGAATGCAGCGCTTGCCCTGTGGACACAGATATTTGGACGCCTGTGTTTTCTTCATCTGAGGAAAAGGAGAAGGGATGATACATTGAGAATAAAAATAGATCAGGCTGACAGCATAGTTCTGAATCACAAGCTGGGGTGAAATTGGGCAAGCTGGCATTATTGGCTTTTTTGGAGGGCAGCCATGCATGCCTTTTAACCTAGATGTCCCGCTTTTGTCTTTCTCCTGTACATCCTTATTCTGTCGTTCACTTTGTCTCTTATTTCCTTATCGTCCTAATGAAGTGTGTAGACCACAAATCCAAACAGGAACAAGATTCAAAAAGAGCCAAATTATTAAGCACAATCATACATGCACTATCACACCAGATTTGTGCATGAACAAGCCTCTCGACTAGTCTGTTTGTGACAGGTTCCTGTTCTCAACATACACAGAAACACTTCTCACGCTCTCTTCCTTGGTTTACACAACACCTCATGGTCTGAAAATAGTGTTTGTGGCTTTTCATAGTAGAGAAACTTGGAAGGGAATTCAGTACAGAGTTTAATGACAGTCAATCAGCAAAGAAAAAATGCTTTCTACTGATGTCTCATTTAATAAGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106696 True 2007 lncRNA 0.39 2 1968538 1978432

Neighbor

gene id symbol gene type direction distance location
CI01000016_01656995_01657299 NA coding upstream 310148 1656995 ~ 1658390 (+)
CI01000016_01588035_01601276 RSPO2 coding upstream 366629 1587070 ~ 1601909 (+)
CI01000016_01563821_01567070 NA coding upstream 401009 1562398 ~ 1567529 (+)
CI01000016_01509959_01560806 EIF3E.L, EIF3EB, EIF3E, EIF3E.S, EIF3EA coding upstream 407416 1509959 ~ 1561122 (+)
CI01000016_01476236_01476607 NA coding upstream 491776 1476236 ~ 1476762 (+)
CI01000016_01989129_01990437 NA coding downstream 10592 1989024 ~ 1990995 (+)
CI01000016_02000795_02079453 ADGRB1, ADGRB1A coding downstream 21777 2000209 ~ 2080896 (+)
CI01000016_02220464_02221013 NA coding downstream 242032 2220464 ~ 2221030 (+)
CI01000016_02235073_02261683 CEP162 coding downstream 256641 2235073 ~ 2262308 (+)
CI01000016_02337039_02343109 POGZB coding downstream 358607 2337039 ~ 2343109 (+)
G93711 NA non-coding upstream 26221 1913797 ~ 1942317 (+)
G93624 NA non-coding upstream 414512 1496393 ~ 1554026 (+)
G93565 NA non-coding upstream 499183 1462117 ~ 1469355 (+)
G93567 NA non-coding upstream 506560 1461600 ~ 1461978 (+)
G93547 NA non-coding upstream 518944 1394698 ~ 1449594 (+)
G93777 NA non-coding downstream 61157 2039589 ~ 2045283 (+)
G93794 NA non-coding downstream 115520 2093952 ~ 2094182 (+)
G93779 NA non-coding downstream 126474 2104906 ~ 2105133 (+)
G94696 NA non-coding downstream 220576 2199008 ~ 2271134 (+)
G93406 NA other upstream 1041006 905400 ~ 927532 (+)
G95439 NA other downstream 1883743 3862175 ~ 3862305 (+)
G95648 NA other downstream 2294204 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2856126 4829592 ~ 4837457 (+)
G95792 NA other downstream 3241448 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 3427437 5405791 ~ 5407963 (+)

Expression


Co-expression Network