Gene
RNA
| Item | Value |
|---|---|
| gene id | G94751 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 2197265 ~ 2197495 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU107791 | True | 231 | lncRNA | 0.36 | 1 | 2197265 | 2197495 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_02120276_02136906 | NA | coding | downstream | 60080 | 2120156 ~ 2137185 (-) |
| CI01000016_01835869_01947822 | TSNARE1 | coding | downstream | 249423 | 1835745 ~ 1947842 (-) |
| CI01000016_01689633_01693021 | NA | coding | downstream | 503593 | 1689495 ~ 1693672 (-) |
| CI01000016_01659416_01671969 | NA | coding | downstream | 525296 | 1658974 ~ 1671969 (-) |
| CI01000016_01653014_01654553 | NA | coding | downstream | 542706 | 1652387 ~ 1654559 (-) |
| CI01000016_02263634_02265929 | MRAP2, MRAP2A | coding | upstream | 65750 | 2263245 ~ 2265929 (-) |
| CI01000016_02288848_02311105 | PLEKHO1B | coding | upstream | 89802 | 2287297 ~ 2311105 (-) |
| CI01000016_02328065_02334778 | NA | coding | upstream | 130317 | 2327812 ~ 2335736 (-) |
| CI01000016_02467451_02477544 | NA | coding | upstream | 269956 | 2467451 ~ 2477544 (-) |
| CI01000016_02568824_02575674 | DECR1 | coding | upstream | 371115 | 2568610 ~ 2575674 (-) |
| G94748 | NA | non-coding | downstream | 16805 | 2180254 ~ 2180460 (-) |
| G94674 | NA | non-coding | downstream | 46676 | 2150363 ~ 2150589 (-) |
| G94634 | NA | non-coding | downstream | 118856 | 2072464 ~ 2078409 (-) |
| G94510 | NA | non-coding | downstream | 459692 | 1733079 ~ 1737573 (-) |
| G94768 | NA | non-coding | upstream | 44728 | 2242223 ~ 2249672 (-) |
| G94796 | NA | non-coding | upstream | 235697 | 2433192 ~ 2446161 (-) |
| G95091 | NA | non-coding | upstream | 324226 | 2521721 ~ 2522003 (-) |
| G95100 | NA | non-coding | upstream | 330532 | 2528027 ~ 2537970 (-) |
| G95102 | NA | non-coding | upstream | 344088 | 2541583 ~ 2541802 (-) |
| G94786 | NA | other | upstream | 73341 | 2270836 ~ 2276275 (-) |
| G95070 | NA | other | upstream | 787765 | 2985260 ~ 2985641 (-) |
| CI01000016_03647744_03675574 | NA | other | upstream | 1438112 | 3647653 ~ 3675585 (-) |
| CI01000016_03921124_03930996 | NA | other | upstream | 1668266 | 3920055 ~ 3931162 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 2715213 | 4918975 ~ 4922518 (-) |
