G94768


Basic Information

Item Value
gene id G94768
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2242223 ~ 2249672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU107815
CCTGGTGAGAGCAAGCTCAGTGAGAAGTCTCTGATTTTCCATGAACAAAGCCTCCTCGTTTTGTTTGCTTTGAGCTTGGAGTGCTTTCATTTGCAGATATAGCTTCTCATTCTCCTGATGGTAACCCTGAATCAGAGTCTCCTGTTCCTTCATCTCTTTCTCTATGAGCTTGAGTTTCTCTTCAGTCACAGGGTCCGAAGTTTCGCCAAAATTCCACTTTCGTCTGTTACTCGCCTCTTCGGCACGGTGTAGCTTGCTCTGTAACACATAATTCTCCTGCCTGAGTGCTGCCAGCTCTTGCTTGTGCTCCTCTTGTAACTGGTTTTCCCTCAGATGGAGCTCTCTTTCTTTTTGGGCGAGCTGAAGACGGAAACACTCCAGTGATGAGCGCTCCTGCTGAAAGGACGTGCCACCATCCATATTCTCTTGCATCACTTCAAGTCCTGTCACTGATTTGGGTGTGATCCTGTCTGCTCGGAGATGGCCATTATCCTTTAGACTGCTGGCTTGTACCTGATGCTGTAGGAATGTAGCAAAGGACTGCACAGATGTAACCAGTTCACTGCTTAGCCTTAAACTTGTGTCTAAACCTTTGACTGCTTGTGTTTGACTGAGGTTGTGAGTCTTTTTTAGGGTCTGGTTCTGAGTTTTCCTCTGTGTTAGTGGAGATGGAGGTTTAGCAGCTTGGCTGGTTCTGCTGGATGCAGGTCCTCTGGGTATCAGCCTGCTCTCAGGTTTTTTGGCCCTTGATGGAACAGGAGTTTTTCTAGATGAAGCAGATGCAAATGCATTGGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU107815 True 797 lncRNA 0.47 5 2242223 2249672

Neighbor

gene id symbol gene type direction distance location
CI01000016_02120276_02136906 NA coding downstream 105038 2120156 ~ 2137185 (-)
CI01000016_01835869_01947822 TSNARE1 coding downstream 294381 1835745 ~ 1947842 (-)
CI01000016_01689633_01693021 NA coding downstream 548551 1689495 ~ 1693672 (-)
CI01000016_01659416_01671969 NA coding downstream 570254 1658974 ~ 1671969 (-)
CI01000016_01653014_01654553 NA coding downstream 587664 1652387 ~ 1654559 (-)
CI01000016_02263634_02265929 MRAP2, MRAP2A coding upstream 13573 2263245 ~ 2265929 (-)
CI01000016_02288848_02311105 PLEKHO1B coding upstream 37625 2287297 ~ 2311105 (-)
CI01000016_02328065_02334778 NA coding upstream 78140 2327812 ~ 2335736 (-)
CI01000016_02467451_02477544 NA coding upstream 217779 2467451 ~ 2477544 (-)
CI01000016_02568824_02575674 DECR1 coding upstream 318938 2568610 ~ 2575674 (-)
G94751 NA non-coding downstream 44728 2197265 ~ 2197495 (-)
G94748 NA non-coding downstream 61763 2180254 ~ 2180460 (-)
G94674 NA non-coding downstream 91634 2150363 ~ 2150589 (-)
G94634 NA non-coding downstream 163814 2072464 ~ 2078409 (-)
G94796 NA non-coding upstream 183520 2433192 ~ 2446161 (-)
G95091 NA non-coding upstream 272049 2521721 ~ 2522003 (-)
G95100 NA non-coding upstream 278355 2528027 ~ 2537970 (-)
G95102 NA non-coding upstream 291911 2541583 ~ 2541802 (-)
G95103 NA non-coding upstream 292301 2541973 ~ 2542218 (-)
G94786 NA other upstream 21164 2270836 ~ 2276275 (-)
G95070 NA other upstream 735588 2985260 ~ 2985641 (-)
CI01000016_03647744_03675574 NA other upstream 1385935 3647653 ~ 3675585 (-)
CI01000016_03921124_03930996 NA other upstream 1616089 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 2663036 4918975 ~ 4922518 (-)

Expression


Co-expression Network