Gene
RNA
| Item | Value |
|---|---|
| gene id | G94726 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 2330526 ~ 2333592 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU107762 | True | 487 | lncRNA | 0.47 | 3 | 2330526 | 2333592 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_02235073_02261683 | CEP162 | coding | upstream | 68218 | 2235073 ~ 2262308 (+) |
| CI01000016_02220464_02221013 | NA | coding | upstream | 109496 | 2220464 ~ 2221030 (+) |
| CI01000016_02000795_02079453 | ADGRB1, ADGRB1A | coding | upstream | 249630 | 2000209 ~ 2080896 (+) |
| CI01000016_01989129_01990437 | NA | coding | upstream | 339531 | 1989024 ~ 1990995 (+) |
| CI01000016_01656995_01657299 | NA | coding | upstream | 672136 | 1656995 ~ 1658390 (+) |
| CI01000016_02337039_02343109 | POGZB | coding | downstream | 3447 | 2337039 ~ 2343109 (+) |
| CI01000016_02355737_02362570 | SELENBP1, SBP1 | coding | downstream | 22145 | 2355737 ~ 2363246 (+) |
| CI01000016_02367430_02368661 | PI4KB | coding | downstream | 33838 | 2367430 ~ 2368687 (+) |
| CI01000016_02374077_02383616 | PI4KB | coding | downstream | 40351 | 2373943 ~ 2384488 (+) |
| CI01000016_02385791_02400026 | MYO1EB | coding | downstream | 52199 | 2385791 ~ 2400452 (+) |
| G94696 | NA | non-coding | upstream | 59392 | 2199008 ~ 2271134 (+) |
| G93779 | NA | non-coding | upstream | 225393 | 2104906 ~ 2105133 (+) |
| G93794 | NA | non-coding | upstream | 236344 | 2093952 ~ 2094182 (+) |
| G93777 | NA | non-coding | upstream | 285243 | 2039589 ~ 2045283 (+) |
| G94729 | NA | non-coding | downstream | 23896 | 2357488 ~ 2358108 (+) |
| G94848 | NA | non-coding | downstream | 169535 | 2503127 ~ 2503442 (+) |
| G94850 | NA | non-coding | downstream | 175051 | 2508643 ~ 2508891 (+) |
| G94874 | NA | non-coding | downstream | 211159 | 2544751 ~ 2545005 (+) |
| G94898 | NA | non-coding | downstream | 358091 | 2691683 ~ 2692011 (+) |
| G93406 | NA | other | upstream | 1402994 | 905400 ~ 927532 (+) |
| G95439 | NA | other | downstream | 1528583 | 3862175 ~ 3862305 (+) |
| G95648 | NA | other | downstream | 1939044 | 4272636 ~ 4273905 (+) |
| CI01000016_04829592_04837305 | NA | other | downstream | 2500966 | 4829592 ~ 4837457 (+) |
| G95792 | NA | other | downstream | 2886288 | 5219880 ~ 5225941 (+) |
| CI01000016_05405791_05407797 | AICDA | other | downstream | 3072277 | 5405791 ~ 5407963 (+) |
