XLOC_007953 (cab39l1)


Basic Information

Item Value
gene id XLOC_007953
gene name cab39l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 31476973 ~ 31489410 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015529
AACTTCCCTGATAAAGTAAAGCGGCAGAAGCTTGAAGTGTACGAGCAGCAAACCACTCCTAAATTAATCGCAGTTACTAAACCCCGAAATTATCTCCTTTTGGAGAGTTAAATACTATGTTCGTCATAGCTTGAACTGGATTAATAGCTTTATATTTAGCTGCTCGCAGATCCATCCAACTTTGGTCCTCATCGCGGTGTTTGGATTATAAATTGGACGTTTTAAGTCTGGTGAATGCGgtgAAACATTTCCATCGTCCTTCCACATCCAACGCACATCCCAGCTAAAACCATGCCGTTCCCATTTGGGAAGTCTCAAAAGAGCCCTGCAGAGATTGTAAAGAGTCTGAAGGAGAATGTGGCATACTTGGAGAAGCTGGAATCATCTGAAAGCAAGAAATGTGAAAAGGTTGCAGAGGAAGTATCTAAAAATCTCTCGTCGTTGAAAGAGGTGCTGTGTGGCACCGGAGACAAGGAGCCTCAGACCGAAGCAGTGGCCCAACTGGCTCAAGAGCTCTACAACACCAACCTCCTCATTTCCCTCATAGCAAATCTACAGAGGATTGATTTCGAGGGAAAGAAGGATGTGGTGCATCTGTTTAGCAACATAGTACGTCGCCAGATTGGTGCTCGCACGCCGACTGTGGAGTACATCTCTTCTCACTCACAAATCCTCTTTATGCTGCTGAAAGGCTATGAAACTTCAGAAGTGGCTCTAAACTGCGGAATGATGCTGAGGGAGTGTCTGCGTCATGATCCTCTTGCCCGAATCGTTCTGTTCTCTGAGGATTTCTACTGCTTCTTCCGCTATGTGGAGATGTCTACCTTTGACATTGCCTCTGATGCTTTTGCATCATTTAAGGATCTCCTGACAAGACACAAGATCATGTGTGCTGACTTCTTGGAGACAAATTACGACAGAGTGTTCACAGAGTATGAAAAGCTGCTGCATTCTGAAAATTATGTCACCAAGCGCCAGTCTCTGAAGCTCTTGGGAGAACTACTGCTGGACAGACACAACTTCACAGTCATGACCAAATACATCAGTCGAGCTGAGAACCTAAAGCTGATGATGAATATGTTGAGAGACAACAGCCGCAACATCCAATTCGAAGCCTTCCACGTCTTTAAGGTGTTTGTGGCAAACCCCAATAAGACACAGCCTGTGCTGGACATCCTCCTCAAGAATCAGTCCAAGCTGGTGGAGTTCCTGAGCCACTTTCAAACGGACCGTTCTGAAGACGAGCAGTTCTGTGATGAGAAGAACTATCTCATTAAGCAGATCCGGGACCTCAAACGGCCTGCACCGGCAGAGGAGTCCTAATGGGAAGATGTGGAGCGTAGAACCGGGGCGCTCGGCTAGTGACATGGTTTGATTTATGTGGGGTGAGATTTGGATTGAAGGGAAAGTCAAAGAACGAAACAAAGAAAGGCATCGCTGGGAATAAATCTTTTTCATATAACCTGGTTGAGAAATGCTGTCAGGATGTGCAAACACATGTCTGTCCCTTTATTTGGGGCGAGCAGGTTTTTGCTGCAGGAGGAGCATGTGGAACTGAAACACTCCATTTAAACCTATATACAATTTGAGCACTGCCCTTACAAAAGAAGGCAAATCGATTCGCCTTCATAtggtaaattaaaacatttatccaAATTCATCCGTTCAGggctttttaatattgtttttaaaagttagagtAAGCACATTGGTACAGGTATGGCTTTGCATATTTGCACTAAATCTGAGAGCTTTGCTTCAGGTTGGCCATTAGTGCCAGTTCTTAATCTCGCAACAAGAAAACCAAATGTTAATGAACACACAAAGAAAAAATACTAGATCATAAATACAGTAGAGTATGGGGCCATCTTTCCAGCAGACGAACACCAATTTAATGGGACATTCTCACGTTTAAACTAGTTAAAGGacattaaagcattttaatagcCAGAAAATGTCATGTGGTTAAGCAAAACCTTATCTTTGAGGAAAAATAGCCCGGGGAGTTCAGTGGTCATGCTGCACTCCATTTCCAATTTTAACTGGGTGCCTTATTTAAAAAGTTTGCTCATTCTGGGTCttctattacatttatttatctataacaTTGGATTTGTAGTATTGCTCTGCTTTTGCTTGGGTTAACACCTTTAGGAGtactagttttattttaaactattaaaacattatgtgaaataactgaaaagGTAATActcctttaaaaaaattttctCAGTTAAAAAgaggttcaccccaaaattttgtAATTTACTGACACCCAGGCAATCCAAGAGGTGACCCCTTTTTCCAGTAGATTTTAGTTAACCTTGATCTTGATTAgatttcaatttaaaatgaatatcACTGGCTGTTGGCATGtttagagctaaaaaaaaaattaaaaaaaaccatTAACAGCGTTTTGCCTCGATaggtttttattcttttttttttttttttttgactctcaaCGTACTGGTAGCTTTACGTTGACTTtaactttgatttatttatgatcACATTTTGAGCAAAAGAAGTCGCCAACATCTTGGATGCCTAAAAATgcaagtaaattaacagcaaatttaaattttgaggtgaactctgcatttaaaataaactgtgaaatCAACTCTAGTGGGAAAACATGGTACACAATTACAGTGCAAGACATGAtaacctccacacacacacacacacaaacactgtaaccctgaaaaaatgtaaaaagccgAAGCATGTTGCGAGTTTCTTCATGCTGCATTTTGATGGACTTCGCTTAGACTAgccaattaagcctttaaaagatGGATGCAATAGGAAAGACTGTTTAACACCGTTCTTCATGTCCTGCACTGTCAAACTTGAATGAGCCAAAGCCGTGGTAACACACGTTATATCTTAAGATGCCTGACTATGTACAACTATGGATTGCACTTTTCAGTACGTCTTTGACGTTTTCGATGAAATGCAGAACAGGATTCTACTGAGAGGTTTCACCATTAGTCTTTATACCCTAAGTTGAATATGTTTTATGTACTCTGTTTGCACAAAAGTTCCTTTCTTATATACCTCATAGGTTTTAAATTCCTaagtgctgttttttttcccccctctgCTTCGATTAAATTGATATTGTAGTAACACTTTGCAGTAAGGTCAGAGATTTTATTGATGTTTCAATTGGAAAAAATAACAATAGTttgtattatgaattaatgaacaaagtGTGCAATTAAGATGTGTTAATTAAAAGGAATAAttaacccaaaaatgtaaattttactaacctttaagtggtttcaaaccttttgtgatttttgttgttgtttaaagcaATATATTTTGGAAAGGGGTAACCATCTGACATctatattaggaaaaacaaaatactatggaggtctgTGCTATGGCTACCAGTTCtgtacattttctttaaaatctttacATTTCAACTGTTTTGGAACCGGTGGAGGGGgagtacattatttatttttttgggtgaactattcattttAATGCTAGCAAAtcaaaccttattgtaaagtgtttctgGTATTGTAGATTTAGAGTGTAGTTTGAATTATGCAAGTCTAAAAAAGACCTTACAACATGCCACAGTTGTGGTCTTGTAATGCTGAATAGGACCTACAAGGGAAACTATTGAATCTTTGCAGTTTGCTAATGGGTACATAGAATGTTACTCACTgtgcttttgtaaatgagccacagtttcactccaaaatgtttttaatgaatgCAAATGTTTGCTTTTGCTTTGACATTTTTCAGTCAGCTCATCGCCAGAAGCAAAAaaccaaacattttttattttgcaagtctGACTTGTGCATGCGGAACTTTATTGTATTTTGGAGGGAAAGGGGGAAAACCTTCAGAGCTGCCTTTCTTTGTTTTGTATAAAATGTAACCTGTGTAAAATCACGAAGCCTTTGTGTTGAACGGGGGCACAGACAGATTCAccccccctttaaaaaaatatctccaGCTATCTATAACCAAACATTTCCACCATTTCATTAAATGTCACTTGATACCACAAGTACAAGAATGGGTGTTCAGCCAAATGTGATTATTCCGCTGACAGGGTTTTAAAGGAGGTTTTGTCCTTAAGCTTGTTGAAGCTTTGAGCCTTCAGATTCTCCATGCAGTGATAGTGATCTCTGAGGACAAAGAgattccaaataatgtttaatcttTGATAAGTTATTACGGTGCATTATATTCACCTTTATTATTTGCAGTTTTGACTGATAATGTTTGCTATGCTTTCACTGTTTTTCACTCATTTTCCTACGAGTTTTCTGTTCTATTTTCCACTGTGGGAGAGGACTATGTATGTacataaagttttattttaaaaagacaagTGTGGAGGCAtattggaaataaaacaaacaaca
>TCONS_00015530
ACCATGCCGTTCCCATTTGGGAAGTCTCAAAAGAGCCCTGCAGAGATTGTAAAGAGTCTGAAGGAGAATGTGGCATACTTGGAGAAGCTGGAATCATCTGAAAGCAAGAAATGTGAAAAGGTTGCAGAGGAAGTATCTAAAAATCTCTCGTCGTTGAAAGAGGTGCTGTGTGGCACCGGAGACAAGGAGCCTCAGACCGAAGCAGTGGCCCAACTGGCTCAAGAGCTCTACAACACCAACCTCCTCATTTCCCTCATAGCAAATCTACAGAGGATTGATTTCGAGGGAAAGAAGGATGTGGTGCATCTGTTTAGCAACATAGTACGTCGCCAGATTGGTGCTCGCACGCCGACTGTGGAGTACATCTCTTCTCACTCACAAATCCTCTTTATGCTGCTGAAAGGCTATGAAACTTCAGAAGTGGCTCTAAACTGCGGAATGATGCTGAGGGAGTGTCTGCGTCATGATCCTCTTGCCCGAATCGTTCTGTTCTCTGAGGATTTCTACTGCTTCTTCCGCTATGTGGAGATGTCTACCTTTGACATTGCCTCTGATGCTTTTGCATCATTTAAGGATCTCCTGACAAGACACAAGATCATGTGTGCTGACTTCTTGGAGACAAATTACGACAGAGTGTTCACAGAGTATGAAAAGCTGCTGCATTCTGAAAATTATGTCACCAAGCGCCAGTCTCTGAAGCTCTTGGGAGAACTACTGCTGGACAGACACAACTTCACAGTCATGACCAAATACATCAGTCGAGCTGAGAACCTAAAGCTGATGATGAATATGTTGAGAGACAACAGCCGCAACATCCAATTCGAAGCCTTCCACGTCTTTAAGGTGTTTGTGGCAAACCCCAATAAGACACAGCCTGTGCTGGACATCCTCCTCAAGAATCAGTCCAAGCTGGTGGAGTTCCTGAGCCACTTTCAAACGGACCGTTCTGAAGACGAGCAGTTCTGTGATGAGAAGAACTATCTCATTAAGCAGATCCGGGACCTCAAACGGCCTGCACCGGCAGAGGAGTCCTAA

Function

symbol description
cab39l1 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005575 cellular_component cellular_component
GO:0043539 protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2897 Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000021374

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015529 False 4424 mRNA 0.38 9 31476973 31489410
TCONS_00015530 True 1035 mRNA 0.47 8 31480074 31488100

Neighbor

gene id symbol gene type direction distance location
XLOC_007952 NA coding downstream 7513 31466606 ~ 31469460 (-)
XLOC_007950 gpc3 coding downstream 11068 31176952 ~ 31465905 (-)
XLOC_007951 BX248522.1 coding downstream 150256 31326601 ~ 31326717 (-)
XLOC_007949 gpc4 coding downstream 325825 31090151 ~ 31151148 (-)
XLOC_007948 hs6st2 coding downstream 389143 31081862 ~ 31087830 (-)
XLOC_007954 dre-mir-457b coding upstream 32520 31521930 ~ 31522007 (-)
XLOC_007955 mospd1 coding upstream 61349 31550759 ~ 31562795 (-)
XLOC_007956 mmgt1 coding upstream 126167 31615577 ~ 31619408 (-)
XLOC_007957 BX511227.4 coding upstream 143736 31633146 ~ 31635433 (-)
XLOC_007958 map7d3 coding upstream 179100 31668510 ~ 31715412 (-)
XLOC_007641 CU855896.1 misc downstream 29069133 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 29069542 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 29069901 2406945 ~ 2407072 (-)
XLOC_007930 FP015860.1 non-coding downstream 940089 30511481 ~ 30536884 (-)
XLOC_007925 NA non-coding downstream 1178802 30297374 ~ 30298171 (-)
XLOC_007920 NA non-coding downstream 1769930 29706704 ~ 29707043 (-)
XLOC_007960 AL929434.1 non-coding upstream 370020 31859430 ~ 31859506 (-)
XLOC_007961 AL929434.3 non-coding upstream 370998 31860408 ~ 31860470 (-)
XLOC_007962 AL929434.2 non-coding upstream 371340 31860750 ~ 31860827 (-)

Expression


Co-expression Network