G94858


Basic Information

Item Value
gene id G94858
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2817387 ~ 2822216 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU107949
TGTGAGTATATAAATGCATGTCAAATGTATATATCAGACACAGTGCAAATCAGAACCCAGACAACTAAGATCTAATGTTAAGTATGAATGTAAATTATTCATGTCCCCCCATATTTTTAACTCTTCAAAAACAAATTCCCCACAACATAAACCTTTTTATTAAAATATCTAAATGCCAAATTGATTACTCCATCTAAAGAAGGTGCTTAGCCAATAGAAAAAAGGCATACAATTTGAAGACAAGACACATTAGAAAACCCATAATAAAATATGCACACACATATTGTCAAAACCTTGCACCTCGAGAAATAAAAGATTTGCTAACAGTCTTCAAAACATTTGTAAGTACATGTATTTTTAACTTTTTTGTATGCTGTGTGTCCAGTTTTAAAGTTGACAACTTTGACTAGCAGTTGGATAAATGTAAGTCTTTTTTTCCCCACATGTCATTCACTGGGACATGTTTACCTGCTGTAGTTTGGTCCCATAGAGAGACTGGGTCATTCATATAAGTCATTAAATTATGATCTTTGTTTCTATAGGCAGACACACAAGGGTCTCAAAGAGTTTCATTTAAGCCCACAAAATGTCAATATGTACATCTATATATATTTTTTTAACAGCAATAATGTCCTTTCTTAAGGCAAAAACAGAGAACATAACCAGCTATAGTTCTATAGGCACTATGGCACATCTTAAGTCGGGTTCACACTGTACGATTTTGGCAGTCTGACACAAATTTTGTGAATCCTAAATGATTCCTCAGATCCTAGGTCAAAATCTGAAGTCTTTAATTGTTATTTTGACATGTTCACCAACAAATTTTACCTCAGATGAAATTCTGGCAGTGTCAAACGTTTTGAAGCACAGTCATGTAGTATGACTTCTCCTACGACAAGGTTCAAATCAAAAACCAAAAGAAGCGCCAAACCTGATGAGGCAATTAGTGAGACAACAACCACCACGAACCACCACTTGCTCCACATACATCGTCTTCATTTTTTTCCCCGTTTTCTTTTCAAAAGAAGCCATGAGCAATGCTAAAAATTGTTTTTGTTTGCTAGCCCCCCATTTATATCCCGCATGTAAACGCAGCTCACGTCATTGAACGTGTCACGGATTGATGAGGTAAAACTCTGGATGAGTCTTCTTGTGTGCGTCCATTTTTAACGCGTCTTGATTGCTGTACAGTCTGACATTTATGACAACTAGGATCCTACAGTTTGACATGGCTTACAGCAGGGAACATATTCAAACAGTCTGAGAAGCAACAGTCGTAAAGGACTATTATAAATCTTACAGTGTGCACCCGGCTTTAGGCACATACCAAACTAGTGATCGACTAAAACAGGTTTTTTGATAGCCGATATCAACATCTAGAAATTAGAGTGTCCGATGACAGGTATATATGGTCATCGGACGATATAATGAGCTGTACTGTATTTGTAACATTAAATCACAATTCACACACACAAAAAATGAAATTTCTTACTGTCCATAGACAAAGCTGTCAGTAGAATTTGAAAAACTTCCATTAATTAAGTTGATATGGTTATAATAATAGCCTCAAAATGGCCAAGTATCTAGCCTATATATTGGTCTATCACTACTTCAAAACTTGCATAATATATTCTGTGTATTTTATGTTTGCATGTTTCAAAAGTCTTGTGCAAAAAAAGAGACAAGATTCTCAATAGAGGCGCTTGAGCGCCAATTCTTTCAGAGATTTAGGGATAGAAAATAAGTGTGAAGTTGGAACAGTTTTATCAGTGACTGTCATGATTAGATGAACATGCTCCTATAAAAATTTCATTTAAACTCCATAATATATGTTTTTCTATGAAGGTGTGCTAATTTGCATGTACAAAAAACAACAAAATCACCACCAAGCTGACACAACCATCAAGAAAATAGGAAATAAAAAAGCAATACAATAAAAAAAGATTTGGATGCAGATATTATATCCATTCATGACAGTGTGAAGGCCGGCAAGTCTTATCCCAGGGTTTAAAGCATGATCTCCTTGTTCTCAAAGGTCCTGTCAAAGTCTTCACTGCTCCATTCTCACTGGTCCTGTTCTACATCATCTCCTTGCTGTTCGCCCTCATCATCAGTGGCCTGGAATTTATCATGGGCCCATTTAGGACTCGTATTATTGGTGGTGTTGGTATTTGTTGCCCTCCGGAGGATGAAACGTCCCCTTGTGCGAACAATATTACCGCGGCCACATCCCCGTGTGTTCATCAGCTTTCTCTCACCTTCACCATCTCTTTCACTGTGCTGCAAAGACAAAAGAAGGGCTTATTATATAACATATATAGTTGTATACCTTGTTGGAGACTTAGTACATAATGAACACAAACATCTAAGGAAAGATTACTCAGTTTAAGCATAATCACCCGTGTTATGTTTGATTGTACGTTGTCATAATATTACATGTACAGACTGAATGTATCAGATAGGATGCATATATATTAATCTTTTTTGTGTGTGTAGTTTTTTTTTTTTGGGGGTAGGGGGTTGTTGAGAAACTGCATTAGAAAGGTGATGCAGAATGGGTGTTTACAAAGATCACAACATACTAGGAAGTATTTCTTGCTCTTGGGAGTGTATTCTTGAACCCAGTCTTCATTCTTTGCTGACATGTTCATCTGTGAATCACCGTTGCTGTTTCCATGGAAATTTCCTCGGTTCCAACTTCTACCACGGATGCTAAGCTGCTAAAAAAATAGCAAATGGTAACCGTAACTATTAAAGCAATAAACAAATATCTATCTTCAGTTCTTCAATACCACCCAACTTACAAAGCCTCCTCGTGCCCTTCCTCTCTCCGCAGGCTCTCCATACTCCCTAAACCCCATCTGGTCTCTGGATAAGCCTTCTGGCTTGATCTCAGCCTCTTCTTCATGGCAAACAGAGGAAGATGAGGAAGATGACTGAGAACGCTCCCGTTTCTTCTTGCTTTTCCTTTGTTTTTTTGTGGTTCTTTGAGGTTTTCTCTGTGGATGTTTCCTTTCTTGATTCGGGAGGTTCCCCCGATACTCTTCCTCCGTACTCTTCCTCTCTGTGCTCTCTCTCTCCACTCGAGTATTTCTTTCTGCGCTCAATATCCAGCCGAAGGTCCATTGAATCACCTTTAGATTTTTTACCATCGACCTGCCGTGAGGAGAAAGAGAGATGTTGTGGCCAGATGAGGGTTAGCGGTGTGATCTATTAGCTTCATGCAGCATTGTATGGGGCGGGACCAAAACGAAAAACACGGCAACAGCTGACTTGAAACAATCATGCAAATGGATGAGAGGAAGAGGCCTTCTCTAATATAATTTTATGTAGCATTTTGGCTTCTTAAAGTCTTTAAACAGGCTTATTAAGCAGTATTTCTCAGAAATGGCAACAGGCTGCATAATAACGTTTTGATTTCCTCTCACTTGCTCAAAAAAGTACAACAAAATAGTACAAAAGACAACATTATAGGACCACAGCAGAAATACTTTCATTGGTGCTCATGAAAGTATGTTGTTTTTACTTGGCCTAAACACCTCACTTGTTCTTTGCAGGCTTTGAAGAGAAATACTTACTATGACTTTTGTTTAGTGTCCTTTGAATGGATTTGACATGGGAACAACTGGTCACTTCCATTTCTGACCTCAGATTTCTTGCCTCAACTGCCTTAGGAAGGCTTGTAAAAGGTTACCATCAAACGTTGAGGGGGCATTTACAACACAACAACCTGAATGCACCTCTTTTTGCATCTCACTTTTTGGACTTTATGCCTCTCTCATCAGAAACAAGAGTTTAGGGAGAGAAGGAAGCCTAAGAATGCTCTGGCCGCATCACTCGCGCAGCATTCTTTTCCAAAACACGTCATATTTCAAAATTTTTGGTCACCTTGAAGCTGTTTTCCATGGTGCTTTTCATCTCATCAAACAGAAGAGAGTGCCTCTTAAAAGCACTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107949 True 3956 lncRNA 0.38 2 2817387 2822216

Neighbor

gene id symbol gene type direction distance location
CI01000016_02793868_02796984 EVA1BA coding upstream 20054 2793868 ~ 2797333 (+)
CI01000016_02741163_02753993 STK40 coding upstream 63334 2741163 ~ 2754053 (+)
CI01000016_02722831_02730864 OSCP1B, OSCP1 coding upstream 85809 2722831 ~ 2731578 (+)
CI01000016_02719966_02722011 MRPS15, PL8L1 coding upstream 95196 2719966 ~ 2722191 (+)
CI01000016_02714495_02719654 NA coding upstream 97641 2714412 ~ 2719746 (+)
CI01000016_02876373_02882129 NA coding downstream 53971 2876187 ~ 2882148 (+)
CI01000016_02918064_02918435 NA coding downstream 95548 2917764 ~ 2918540 (+)
CI01000016_02965137_02979305 SCMH1 coding downstream 142921 2965137 ~ 2979509 (+)
CI01000016_03050072_03055313 CTPS1A, CTPS1, CTPS1B coding downstream 226326 3048542 ~ 3055370 (+)
CI01000016_03056468_03058753 TAF12 coding downstream 234252 3056468 ~ 3059289 (+)
G94905 NA non-coding upstream 1088 2816089 ~ 2816299 (+)
G94904 NA non-coding upstream 4836 2812343 ~ 2812551 (+)
G94901 NA non-coding upstream 83142 2733748 ~ 2734245 (+)
G94898 NA non-coding upstream 125376 2691683 ~ 2692011 (+)
G94874 NA non-coding upstream 272382 2544751 ~ 2545005 (+)
G94906 NA non-coding downstream 8524 2830740 ~ 2832069 (+)
G94908 NA non-coding downstream 13176 2835392 ~ 2835705 (+)
G94909 NA non-coding downstream 15491 2837707 ~ 2837932 (+)
G94910 NA non-coding downstream 15913 2838129 ~ 2838331 (+)
G94911 NA non-coding downstream 16135 2838351 ~ 2838598 (+)
G93406 NA other upstream 1889855 905400 ~ 927532 (+)
G95439 NA other downstream 1039959 3862175 ~ 3862305 (+)
G95648 NA other downstream 1450420 4272636 ~ 4273905 (+)
CI01000016_04829592_04837305 NA other downstream 2012342 4829592 ~ 4837457 (+)
G95792 NA other downstream 2397664 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 2583653 5405791 ~ 5407963 (+)

Expression


Co-expression Network