Gene
RNA
| Item | Value |
|---|---|
| gene id | G95380 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 3406432 ~ 3406702 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU108506 | True | 271 | lncRNA | 0.56 | 1 | 3406432 | 3406702 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_03322103_03326683 | NA | coding | downstream | 75670 | 3322003 ~ 3330762 (-) |
| CI01000016_03082653_03084658 | NA | coding | downstream | 321774 | 3082386 ~ 3084658 (-) |
| CI01000016_03072793_03080040 | NA | coding | downstream | 326392 | 3072728 ~ 3080040 (-) |
| CI01000016_03064633_03068201 | NA | coding | downstream | 337340 | 3064562 ~ 3069092 (-) |
| CI01000016_03062846_03063013 | NA | coding | downstream | 343160 | 3062846 ~ 3063272 (-) |
| CI01000016_03555967_03558776 | C1H1ORF43, CUNH1ORF43 | coding | upstream | 148598 | 3555300 ~ 3559186 (-) |
| CI01000016_03647744_03675574 | NA | coding | upstream | 240951 | 3647653 ~ 3675585 (-) |
| CI01000016_03719404_03722988 | NA | coding | upstream | 312465 | 3719167 ~ 3723058 (-) |
| CI01000016_03834829_03843163 | ZNF687 | coding | upstream | 427798 | 3834500 ~ 3843266 (-) |
| CI01000016_03881771_03883341 | NA | coding | upstream | 473791 | 3880493 ~ 3883466 (-) |
| G95376 | NA | non-coding | downstream | 1572 | 3398182 ~ 3404860 (-) |
| G95315 | NA | non-coding | downstream | 80257 | 3325912 ~ 3326175 (-) |
| G95313 | NA | non-coding | downstream | 81750 | 3324367 ~ 3324682 (-) |
| G95210 | NA | non-coding | downstream | 299984 | 3105760 ~ 3106448 (-) |
| G95387 | NA | non-coding | upstream | 4537 | 3411239 ~ 3411521 (-) |
| G96569 | NA | non-coding | upstream | 29508 | 3436210 ~ 3437197 (-) |
| G96592 | NA | non-coding | upstream | 104601 | 3511303 ~ 3511652 (-) |
| G96597 | NA | non-coding | upstream | 121849 | 3528551 ~ 3528890 (-) |
| G96599 | NA | non-coding | upstream | 123873 | 3530575 ~ 3530946 (-) |
| G95070 | NA | other | downstream | 420791 | 2985260 ~ 2985641 (-) |
| G94786 | NA | other | downstream | 1130157 | 2270836 ~ 2276275 (-) |
| CI01000016_03921124_03930996 | NA | other | upstream | 459059 | 3920055 ~ 3931162 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 1506006 | 4918975 ~ 4922518 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 1918817 | 5325519 ~ 5332874 (-) |
| CI01000016_05412782_05415867 | NA | other | upstream | 2005557 | 5412248 ~ 5415906 (-) |
