G96605


Basic Information

Item Value
gene id G96605
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3549415 ~ 3554643 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109882
TTCATGAAACTAGTTTATTTAAATATAATACACAAGATGCCATTAATTCAAGCATTACACTCATTTTTTACTACAAAAATATTATTATAAAAAAAATAAAGGATGTTGCATGCTAATATGAAGCCTTTCTAATGAATTCACATTAAGGTTAAAGTTCACACAAACAGAAAATATACACAAAACTATCTACAGCTGTGAAGGTGTGAAAGTGAAGATAAACACAGTCATGAAATGCATATTTCAACACACCCTTGTCCAGAATTAAATTAATGAAGTATAAATAAATCTCTTTTGTGATATTAACTGTTTACGTATTACTTTAAGGTGACCAGGTGCTCCAGCCAATCACATCAGTTTTCTAACCAGGTCCAAAAAAATCTGTTAACTGAATGTTGTAAATGGCTAACTGAGTAACTGCAGCAGCTGGCTGGACTGGATAACAGGGGTCACACTGTGTTCTACTGGCCTGAACTAGTCTGGCTCAGTGGAAGACGTGTGTTACATTCTTTCAAACTTATGAAACATTTACAAGACGTCTTTGTTTTTCATAGAAGGCGAGTCATTGGATTCTCCCGCTGTTTCTCTTTGGTTGAGAAAAGCGTGTAGATGAAGAATAAATATTTTTTGTAGTTTTTTTGTTTCAGGATAAGCGTGTCATAACTCACTGTCTCCCTTTTAGTTCTTTCAGCACAATCAGTTATCAGTATTATTTAAGATAAACAAGGAACACTGCTGTTCCTGATCACTTTCCATGCTCTCTGGACTCTCCGAAATAATATATAAAAATCCTTCATCCTTCTTTACTTCATATTCCTTAAATAAAATAAAATAAAAATGTTTTCCCCATCTGTTATCATCTCTATAATTTTTCGAACTCAGAAAAAGACCCTTTAATACCACAAGCGCTTAGCCGAGTTAATACCGAGGGAGATTACGAGAGATAAAGCGAGCTCAATGAGGGTGTTGAGCAACACAATCTGTCTGTCCATTAATATTGGGTGAAAGACATCATCTTTAGAGGGCCAGCCTCAAATAAATACCAAAATATCCCTAGCATCCATCTAGAAGCCCTTCACACTTCTCACAATAATGCAAATGAGTTCTTCATTTTTGTTTTCTTCACTTGTCTTCATAAAAATAGATATGTTCACTTTAACAGTCCCTGTTGTGTCAAACCTACATTGATTATTCGTAGTAAATAATTGTAGCAATAACAGTAACAGACCTCTGCATTGTTAGAAGCATTCTTGGAGAAAAGGCCTTTAGACATTAAAGCAATTGTATGTCCTTTGGTGAAAGTCTGTGGTCATTTGTGTTGCTAGAATTCTCCTGCACTGATATTGGAGGATGGTGCGGTGGTCATAGCAGTGATGTGATGTGGCTGTGGTAATGTTCATGATTTAATTTCAATGACTTTGATGAAGGGCAGACTCTTGTTGGTCTGGGTGGAAGGTCTCAGAGGCTTGCTGTGGAGGAGACACATAAATAGACTTTGAATGTGTGTGCTTGTATGTCCGTTATCAAGCACATGTGACAATTTGCATAAAATAATTTGCACGTAGCTATCGGGATAATTTGCATGTCCTACCTGTAGACAATCTGCGCATTGCCGTCTGATGGCAGGTATGTATTTGACCTTTGACTCCCCAGGTAGTAATCCATCTGATCGCGCATTTGTTTGTTCTGTAAGCAGAGCACATTCACAAAGGTCAGACTTCAGGAAACACTCATGAGATCGCAGATGAAAGGGTGAATTCACTAATCACTTTTGTATGCTGTAAAAGGAATATTATTTGATTTATAAAAGAAACATTTTGCGGGCTTTTTCAAAACCATGTTTTTAAAATATCAAAACTGAATGACTCTCATTGATTCTTTTTAGTGAATCAAAAACATACAGCATAACAAGTGTAGTCCAATTCCTGAACAAATGACTCTAAAGAGTCGATTCTTTTTAGTGAATCAATCAGACACAGCACAACCATTGTGGCCAAACTGATTCCTGAATGATTGACTCCAATGAGTCAGTTCTTTAGAGAATCAAACACAAGCAGCAAAAATCAGTTCATATGACACTATGCATTTTATCAGTAGTATTTTATGCTTATTATTAAATGAAATGTTACCACATTTTTGTATGTTTAATTTTTTTAATATATACACTTATATACATATATACATTACTGCTGTACGTGTTACAAGAAAATACTATCAGTGTTTCTACTTCAAAATTTCGTGTTTATTTCAATGTGTTACTTCTTTGTAATTATTTGTGAAATAGAAAATTGTTGCAAATTGTTTTTTCCGTGTAGTTACGGCCAATTATTGGATTGGACTCTGTGAAAAGTCACAAGTCAATGTAAACACACATTTTTAAAGAACTGTTTATTGTTTATTTGTTTATTTTAAAGAATTGAAAAATGCTACAGTAAAATAATCATTTATGGAACCATTAAGGAACTAGAATCAGTCATAGGAATTGGAACCAGAACCAAAATTGTTGGTAATTGTGAATCCCACCTAGATGTGTTTATATCTTGTAAACTGACCTCTGCATCCAACATGGCCACCTTCTCCTCCAGCTCTCTGATCACTCTGTCTCTCTCCTGAATCACCATGCGCGAGTTCTGAAGCTAAATGACACAACAATGGAAAGCTTGTGTTAGTATGTGAGCCTAACGTGACAAAAGTTCATATGAGAGTGTATGTTTGCACACGTACCTGTTCAATCATTTGACGTAGTTTCCTCTGTTGACTCTTGAGCATGTCATCCAAGTGATGAATCTTTTCTTTCAAAATCGCATTTTCCTTTTCCAGCTCTTACCTCTCCCTCCCTGCATGGCCCTCCTCCCTCAGTTCGTGCAGCTGCAGGAGTTCGGCTTCTTTGGTCATCAGCTGGTCTCTGAGGGTGGAGCTTTCCTGCTCCATGCCGCCCATGAGACGTTGGAGGTCTTCGATCTGCTTATCCTGCTGCTCCTTGCTTTGCTGAACCTTCTTCAGATACTCACTCTGCTCAGATAACTTCTGCTTATACTGACGCGCCTCAGCCAGCAGTTTTTCTCTCTCCTCCTGGTGTTTCTTCTCTGCGTCTTGGAGTTGAGCATACAGACGCTTACTGGCCTCCCTCATCTTCTCTTTTTCCTGCTCATCCATACTATCCTGGAGAGACAGAATATAGTGACAAAATGTTAATGAAAACAATCTGGAATTTGTTTGGTGACAGATGAGTTTGTATGTGTGTTCATGTACTTGTTACATGTGTCTTGCATTAGTTACACAACATAGTGGTTTAAGCAATAAAAAAATAGTAGCAAACGGCACTTAGTTATAAACAAAATATGTCCCACAAAATATTTCCATTGAAACACGCCCACATCTCTCCCAGCAGGTATTTATAGACGTGTGTGAGCGCGGGAGGACAATGTAAGTTAGAGAGAAAGAGGGAGGGATCTTCTCTGTACGTGCGTCAACAGGGTGTGTGTTAAAACACTGACGTATGCTGTCATAGCTCAGCTTTTCCACCCATATTCCTGCTCTAACTACCCAGACACACACATCCCACTGGGAGGATAATCCACATTATTCATTCCTAAAAAGAATCTGCTGCCGCCACATTTAGTTTCATCAAGCAACAAAAGACAAGAATGTGAAGAATTTGAGAAACGTTAAAACCTGCTGAACCAATACCAGCGATTAGAACGAACCAAAGATAATTATTGCAGGTGGCTTAACATGTTTCCCGAGCTATGCGTTTTTGTGTGGTTTCCTGGGTGATTAATTC
>TU109881
TTCATGAAACTAGTTTATTTAAATATAATACACAAGATGCCATTAATTCAAGCATTACACTCATTTTTTACTACAAAAATATTATTATAAAAAAAATAAAGGATGTTGCATGCTAATATGAAGCCTTTCTAATGAATTCACATTAAGGTTAAAGTTCACACAAACAGAAAATATACACAAAACTATCTACAGCTGTGAAGGTGTGAAAGTGAAGATAAACACAGTCATGAAATGCATATTTCAACACACCCTTGTCCAGAATTAAATTAATGAAGTATAAATAAATCTCTTTTGTGATATTAACTGTTTACGTATTACTTTAAGGTGACCAGGTGCTCCAGCCAATCACATCAGTTTTCTAACCAGGTCCAAAAAAATCTGTTAACTGAATGTTGTAAATGGCTAACTGAGTAACTGCAGCAGCTGGCTGGACTGGATAACAGGGGTCACACTGTGTTCTACTGGCCTGAACTAGTCTGGCTCAGTGGAAGACGTGTGTTACATTCTTTCAAACTTATGAAACATTTACAAGACGTCTTTGTTTTTCATAGAAGGCGAGTCATTGGATTCTCCCGCTGTTTCTCTTTGGTTGAGAAAAGCGTGTAGATGAAGAATAAATATTTTTTGTAGTTTTTTTGTTTCAGGATAAGCGTGTCATAACTCACTGTCTCCCTTTTAGTTCTTTCAGCACAATCAGTTATCAGTATTATTTAAGATAAACAAGGAACACTGCTGTTCCTGATCACTTTCCATGCTCTCTGGACTCTCCGAAATAATATATAAAAATCCTTCATCCTTCTTTACTTCATATTCCTTAAATAAAATAAAATAAAAATGTTTTCCCCATCTGTTATCATCTCTATAATTTTTCGAACTCAGAAAAAGACCCTTTAATACCACAAGCGCTTAGCCGAGTTAATACCGAGGGAGATTACGAGAGATAAAGCGAGCTCAATGAGGGTGTTGAGCAACACAATCTGTCTGTCCATTAATATTGGGTGAAAGACATCATCTTTAGAGGGCCAGCCTCAAATAAATACCAAAATATCCCTAGCATCCATCTAGAAGCCCTTCACACTTCTCACAATAATGCAAATGAGTTCTTCATTTTTGTTTTCTTCACTTGTCTTCATAAAAATAGATATGTTCACTTTAACAGTCCCTGTTGTGTCAAACCTACATTGATTATTCGTAGTAAATAATTGTAGCAATAACAGTAACAGACCTCTGCATTGTTAGAAGCATTCTTGGAGAAAAGGCCTTTAGACATTAAAGCAATTGTATGTCCTTTGGTGAAAGTCTGTGGTCATTTGTGTTGCTAGAATTCTCCTGCACTGATATTGGAGGATGGTGCGGTGGTCATAGCAGTGATGTGATGTGGCTGTGGTAATGTTCATGATTTAATTTCAATGACTTTGATGAAGGGCAGACTCTTGTTGGTCTGGGTGGAAGGTCTCAGAGGCTTGCTGTAGACAATCTGCGCATTGCCGTCTGATGGCAGGTATGTATTTGACCTTTGACTCCCCAGGTAGTAATCCATCTGATCGCGCATTTGTTTGTTCTCTGCATCCAACATGGCCACCTTCTCCTCCAGCTCTCTGATCACTCTGTCTCTCTCCTGAATCACCATGCGCGAGTTCTGAAGCTGTTCAATCATTTGACGTAGTTTCCTCTGTTGACTCTTGAGCATGTCATCCAAGTGATGAATCTTTTCTTTCAAAATCGCATTTTCCTTTTCCAGCTCTTCTAACCTCTCCCTCCCTGCATGGCCCTCCTCCCTCAGTTCGTGCAGCTGCAGGAGTTCGGCTTCTTTGGTCATCAGCTGGTCTCTGAGGGTGGAGCTTTCCTGCTCCATGCCGCCCATGAGACGTTGGAGGTCTTCGATCTGCTTATCCTGCTGCTCCTTGCTTTGCTGAACCTTCTTCAGATACTCACTCTGCTCAGATAACTTCTGCTTATACTGACGCGCCTCAGCCTACAAGAACATGAACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU109882 False 3781 lncRNA 0.38 4 3549415 3554643
TU109881 True 1993 lncRNA 0.39 5 3551387 3554643

Neighbor

gene id symbol gene type direction distance location
CI01000016_03322103_03326683 NA coding downstream 218653 3322003 ~ 3330762 (-)
CI01000016_03082653_03084658 NA coding downstream 464757 3082386 ~ 3084658 (-)
CI01000016_03072793_03080040 NA coding downstream 469375 3072728 ~ 3080040 (-)
CI01000016_03064633_03068201 NA coding downstream 480323 3064562 ~ 3069092 (-)
CI01000016_03062846_03063013 NA coding downstream 486143 3062846 ~ 3063272 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding upstream 657 3555300 ~ 3559186 (-)
CI01000016_03647744_03675574 NA coding upstream 93010 3647653 ~ 3675585 (-)
CI01000016_03719404_03722988 NA coding upstream 164524 3719167 ~ 3723058 (-)
CI01000016_03834829_03843163 ZNF687 coding upstream 279857 3834500 ~ 3843266 (-)
CI01000016_03881771_03883341 NA coding upstream 325850 3880493 ~ 3883466 (-)
G96610 NA non-coding downstream 4080 3545119 ~ 3545335 (-)
G96609 NA non-coding downstream 5260 3543873 ~ 3544155 (-)
G96606 NA non-coding downstream 9388 3539786 ~ 3540027 (-)
G96600 NA non-coding downstream 17626 3531586 ~ 3531789 (-)
G96599 NA non-coding downstream 18469 3530575 ~ 3530946 (-)
G96637 NA non-coding upstream 8211 3562854 ~ 3563738 (-)
G96644 NA non-coding upstream 26576 3581219 ~ 3581429 (-)
G96655 NA non-coding upstream 53693 3608336 ~ 3608877 (-)
G96614 NA non-coding upstream 69194 3623837 ~ 3626004 (-)
G96658 NA non-coding upstream 79616 3634259 ~ 3634460 (-)
G95070 NA other downstream 563774 2985260 ~ 2985641 (-)
G94786 NA other downstream 1273140 2270836 ~ 2276275 (-)
CI01000016_03921124_03930996 NA other upstream 311118 3920055 ~ 3931162 (-)
CI01000016_04921091_04922518 NA other upstream 1358065 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1770876 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1857616 5412248 ~ 5415906 (-)

Expression


Co-expression Network