Gene
RNA
| Item | Value |
|---|---|
| gene id | G96622 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 3780804 ~ 3786775 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU109904 | True | 5952 | lncRNA | 0.36 | 2 | 3780804 | 3786775 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_03719404_03722988 | NA | coding | downstream | 57746 | 3719167 ~ 3723058 (-) |
| CI01000016_03647744_03675574 | NA | coding | downstream | 105219 | 3647653 ~ 3675585 (-) |
| CI01000016_03555967_03558776 | C1H1ORF43, CUNH1ORF43 | coding | downstream | 221618 | 3555300 ~ 3559186 (-) |
| CI01000016_03322103_03326683 | NA | coding | downstream | 450042 | 3322003 ~ 3330762 (-) |
| CI01000016_03082653_03084658 | NA | coding | downstream | 696146 | 3082386 ~ 3084658 (-) |
| CI01000016_03834829_03843163 | ZNF687 | coding | upstream | 47725 | 3834500 ~ 3843266 (-) |
| CI01000016_03881771_03883341 | NA | coding | upstream | 93718 | 3880493 ~ 3883466 (-) |
| CI01000016_03921124_03930996 | NA | coding | upstream | 133280 | 3920055 ~ 3931162 (-) |
| CI01000016_04044171_04047247 | TRIM108 | coding | upstream | 257240 | 4044015 ~ 4047305 (-) |
| CI01000016_04084854_04101874 | PIANP | coding | upstream | 297949 | 4084724 ~ 4101953 (-) |
| G96658 | NA | non-coding | downstream | 146344 | 3634259 ~ 3634460 (-) |
| G96614 | NA | non-coding | downstream | 154800 | 3623837 ~ 3626004 (-) |
| G96655 | NA | non-coding | downstream | 171927 | 3608336 ~ 3608877 (-) |
| G96644 | NA | non-coding | downstream | 199375 | 3581219 ~ 3581429 (-) |
| G96637 | NA | non-coding | downstream | 217066 | 3562854 ~ 3563738 (-) |
| G96612 | NA | non-coding | upstream | 631 | 3787406 ~ 3791803 (-) |
| G96672 | NA | non-coding | upstream | 22735 | 3809510 ~ 3811499 (-) |
| G96675 | NA | non-coding | upstream | 32892 | 3819667 ~ 3820628 (-) |
| G96629 | NA | non-coding | upstream | 44750 | 3831525 ~ 3832562 (-) |
| G96687 | NA | non-coding | upstream | 75294 | 3862069 ~ 3887758 (-) |
| G95070 | NA | other | downstream | 795163 | 2985260 ~ 2985641 (-) |
| G94786 | NA | other | downstream | 1504529 | 2270836 ~ 2276275 (-) |
| CI01000016_04921091_04922518 | NA | other | upstream | 1125933 | 4918975 ~ 4922518 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 1538744 | 5325519 ~ 5332874 (-) |
| CI01000016_05412782_05415867 | NA | other | upstream | 1625484 | 5412248 ~ 5415906 (-) |
| G97341 | NA | other | upstream | 2372211 | 6158986 ~ 6159721 (-) |
