G96612


Basic Information

Item Value
gene id G96612
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3787406 ~ 3791803 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109890
CATAATGTACTTATAATGTTTTATTGACAGAAATCCCCCCAACAAGCTTTTGCACCTAGACAGCAGGGATTTAAGTGCTTAAAAGGTAAATACAAAAGTCAATACAGAGTATAGCGATGCTGTGAAATTCAACAGTTAAACAAATATTATCATTGCATATCATGAAATGTATAATGCTTTGATACAAATCTGATCAAATCTAGCAGTGCCAGTTACATTTGCCACAAAGTGATAGTGGACACTGTATCAATATAAATCAATCAACAGTACAGGGAGGAAAGTACTTTATCAGCAGACAGCATGGCACATATAGGGACCATTATCATGTGACCCCCTCCCCCACACCCTTTTAATGTAGGTTTAATGAATGTGGATTTACTACATTATTATTATTGGTAACATGTATGTTAATAACTGAGGCCAGGTTTAAAGCAGTGGGATTTAACTAGTACTGCATTAGATATGTGTACTCACTGGCACAGCATTTCATTTCGCTTCCACAGCAGGAATTTACAAAATACTTGCCCAGGTCATGCAGTTACTCTTATGCTCACTATAGTGCCATGCAATCAGCTTTGTTCCTTTCCCACAAACTGACTGGACCATTAATAAGTATATTTACAATATGAATAATATTGTTACATGTATTAAGTTATACTATAATTTAAATATAATATTTTACAATATAATTGAGTTATTTATATATAGTTACTTGCATACACACGTATACAGTTACACATACTGAACATGTGTCTGATTGCATAACAGACACAAAATAAGTCATATGTAGTATTTATGTATAAATATATAGTTCTATAATATATAACTAAATAATATAATTTCAGCATGTTCATTTAGGTTCACTTCATTTAGGTTAGTCATGATCAGTTGAATTAAAAAGGCAAACTAAATTCTACAAGCTATAAAACCCTGACATGCTAAATATAATAGATAATAGAGCTAATGCTATATAACAGGACTGGTATGTGAAAAGTGAATGTGTGCATATTTAGAAATATAAATATGAATGACTTAAGATGAAGTGTCCAGGTGCAATGATGGAACTTCTCCTGTGGTTTAAAAAAAAAAGGAAAACATTTTAGAAGTACTGTAGTTGTCTGCAAAATATAATATGGTATATTTAAAAAAATAAGACCAAAGATAATAATCTGGGGCCGTATACACAAAACATATCTTACCACTAAGAGTTCTCCTAAATAGCAGTACAAGTTCTTAGAGTTTTCTCTTAAAACCTATTCAAAAAGCTGCTGAGACAAACTTTTACAAAGGAATAGAGAGAAGTCTTAAGCTAAGAGAAAGGGCGGGGTTGACCTCGTTGTTATGGATGATGTCAACAAGCTTACTAACTATCGGATTGGGAAAGGTCCACCAGCCGAACTCGAACTCGGGTCACACGAGCTGCCCACAAGTTTATCTGCGCCAACGATAGGATTATTTTCAACTTGACCGCAATGTCTTATTCTCCATTATTCAATACAATTTGCCTGTACATAAATGAACCTTTATGTTATGTCATCACAGATTAAAATCTATAAATCAAAATATTTATTGCATTCATGAAGAAAAGGTTCAGCACTAAAGGCTCTATCGCCTATTGCCTCAATTCTGTACAGTGTCTTTGGGTGGATTGCTGGGGCGGACTGGCAGCAACGGCCATTAGGATTGTTTGTGATTTGATCTTAGTGACTTATAAGTCCTCTTGACTACTCCTAACTTTTCACAGATTTAGGAGCTAGTTTTAGTGCTAAAATGCTTTGTGAAATACTCTTAGAGGAAAAATTTAGGAGTCCTAAATTTAGGACTGACACGCCCATTATTTTTTAAGAATTTCTCCTTGATCGGCAAGGTAGAAGCTACTTTTAGTCTTAAAATGTTTTGTGAAAACGGCCCCTGGACTATTCATACACATTATAAATGCAGTATATATAAAAAAAGAAAGAGAGAAAGAATGATACTCCATACCAGATTCAAACAGGGTCTTGAGCAGAACCTGTACCACAAAGAGCATATCTTGACCTATATTTTTACATAAAGCACAATGCCAGATGCCAACACCAGCAGAATCACAAACACTGCAATCCCAACACGAATTCTCCAGTCACGAAAACCCACTGGAAAAACAAACAAACATAAAAACACAACAGTTGGTTGGTTAGTGTTCTAATGCCATGTCAATTTCCTTAGCTATTTTCTTGTAACAACTTGAGTATTTCAAGTAACAAGTTGAAATACTATAATGGAGCAATTTAAAAATATATATATAATGTTGTCAAAATTTGCTTTAGATAAAAACTCCCAACTAAATGAATTCAGGGTTAATTTTGTTAAAATTTCTTCTAAAGTGTTTGGGGAGTATTATCATTTTCTAATAGAACTTAAACCAAAACAATTTCTTAAACTATGTTTAACAGATACTGGACACTGGCATGAAAAGCATAGCGGTGGATCAGATATTTGATATTAAGAACTTGTGTGTGTGATTCTGGAATGTCCTATTAGGCATTGTCTATATATGATCTGGGGGGTCAGGGGGGTAGTAGTAAAACAATACAAGCGCAAACGGGGGAAACATTTTGAGTCGACCCTTACTTGCCTCACAGTACTTTGGTCTACTGCCTGCTTTCCTCCTTTATCTCACATACACACAAGTCCGGTGAGAGAGAGCTAGTGTTGCCAAGGTCACGGTTTTCTGGCACAATTAGGCTATTTTAAAAATGAAGTCACAGGAAAAATTACAGAGCCGCTGATTGTGGGGTTTTTTGAGATACTTTTATAATGTATATCATGGCTGCCAAAAAGTTTATCTGTAGAAAAAGAAAATGAAAAAGGATGCTTTTACTAATGTGTATTATCCTCATGCTGTTCCAGACTTGTATGACTTTCATTCTTCAGTAGAACATAAAAGAAGATATTTTGAGGAACATTAGGGTGCAAACTATGTTAGATCTTACTGACTTTACTCTGCCCACAAGTGACAGTCCACTCCCATGAATCACTGTAAGCTATGTAATTATGTCAGTATGTCTAAGCTCTTAAACTACTTACATTTTGGATATTTACCCATAATCTTCAAATATATTTATACGTAGTCAATTATATATTGTACCATCATTTTTTCGATTTGATTCAATTCTATCATTTGCAATGGTTTGTTTGGTTCATGAACCTTTACAAAAAAATCCCTATGACCAAAATGAATAGGAAAAATATTTCCAGTCACTGAAAAGCAGATGTCACTGTTGCATTCCATTATGCTCAAGGATGGTTTTTGCTTGTGTTATGCTCAAATTGTTGCACATTTGCTATGCTAAAGAACAAAAAAATGACAACATGCATGTGCATTCTGGTTTCTGAAACAGGATACTAGCTTGTTGGTCTAAAAACTTTATCATCTTGATACAGATTGATACAGGTTAGTGCTATAACATAAGCAGTTGACCTTACCTTCAAAATGGGTAGTAAGTGGTGTAGAAAGGAAATTTGTGGTGGTGTCACCTGCAATACAATATTTCACTCAGTGCACATACTAGGGCAATACAAGATCTCGAGTTTTCTTTTCTTAATCACCTGATATTACTTTGCGCTAAACTGGGTGTACAGAAGACTAAACACCTGCTTCTCCATTTATAGGTAAAAAAAAGTCTGTAGCATAAAACAGGCAAAATCTCTAATCTAATCTCAGAATCACACTGAAGGTCATTTTATTTGTTATGAGAAACAGAGAAAGATCAAATCTTTCAATTACTAATTGCACATTCGCAAAATCTGCCCACAAGAGATGCAATGCTGTTGCTAATTTATCTTGTTAGCACCTGCTCTACTGTTTGAACTACGGGAATACTTGTATGCTTGTATTGCAGACAGTAAATTAAAGCGGTGTAAGAAGTATCCTATTGTCAAGATAAACAGGTATGTTTATAAAGATTATGTAGTCAGTCAAATTAGTATATAGTAGTAAATAAATTACTTACAAGAGCACTGCATAGTTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU109890 True 4012 lncRNA 0.34 2 3787406 3791803

Neighbor

gene id symbol gene type direction distance location
CI01000016_03719404_03722988 NA coding downstream 64348 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 111821 3647653 ~ 3675585 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding downstream 228220 3555300 ~ 3559186 (-)
CI01000016_03322103_03326683 NA coding downstream 456644 3322003 ~ 3330762 (-)
CI01000016_03082653_03084658 NA coding downstream 702748 3082386 ~ 3084658 (-)
CI01000016_03834829_03843163 ZNF687 coding upstream 42697 3834500 ~ 3843266 (-)
CI01000016_03881771_03883341 NA coding upstream 88690 3880493 ~ 3883466 (-)
CI01000016_03921124_03930996 NA coding upstream 128252 3920055 ~ 3931162 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 252212 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 292921 4084724 ~ 4101953 (-)
G96622 NA non-coding downstream 631 3780804 ~ 3786775 (-)
G96658 NA non-coding downstream 152946 3634259 ~ 3634460 (-)
G96614 NA non-coding downstream 161402 3623837 ~ 3626004 (-)
G96655 NA non-coding downstream 178529 3608336 ~ 3608877 (-)
G96644 NA non-coding downstream 205977 3581219 ~ 3581429 (-)
G96672 NA non-coding upstream 17707 3809510 ~ 3811499 (-)
G96675 NA non-coding upstream 27864 3819667 ~ 3820628 (-)
G96629 NA non-coding upstream 39722 3831525 ~ 3832562 (-)
G96687 NA non-coding upstream 70266 3862069 ~ 3887758 (-)
G96686 NA non-coding upstream 71362 3863165 ~ 3902758 (-)
G95070 NA other downstream 801765 2985260 ~ 2985641 (-)
G94786 NA other downstream 1511131 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 1120905 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1533716 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1620456 5412248 ~ 5415906 (-)
G97341 NA other upstream 2367183 6158986 ~ 6159721 (-)

Expression


Co-expression Network