G96686


Basic Information

Item Value
gene id G96686
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3863165 ~ 3902758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109996
GAGACTGACGTATGTATGTAAAAAAGAAACGTCTGTTTCCAGTAAGGATTGCATAAACCATAGTGATAGATGCCATCGGCCCATTTGGGGTTTAAGCCGGAACTTTGTGAAGCAGGAAAGTTGAAAACACGCGAACATACAATGTTTTTTTATTACTTCAGTAAGTTTCTGAACAAATTCCTCTTCATTCAGTGTCTGCTCAGTTCTCATCAGTAGCACAGACCTTACCGGACAAATCCAACTTCCAGGAGCTCCAAGTAAGTGTTCACTGGCACGTCTGCAATAGGAGGTACCTTTAGTGCGTGTGTGTGTGTTTGTGTGTGTGCGTGCATATGTTACAGCAGTCGTCCTCTGCATTCTGTTGATCCACAGCAGCACAGAAGCTCCTTGCCCTCTACACTGCCAACTTCATAATTATAATCCCATGTCAACTCCGTCCCTGCTCGGATTCGCCTGCAGAAACACACAGGTTAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU109996 True 476 lncRNA 0.44 2 3863165 3902758

Neighbor

gene id symbol gene type direction distance location
CI01000016_03834829_03843163 ZNF687 coding downstream 19899 3834500 ~ 3843266 (-)
CI01000016_03719404_03722988 NA coding downstream 140107 3719167 ~ 3723058 (-)
CI01000016_03647744_03675574 NA coding downstream 187580 3647653 ~ 3675585 (-)
CI01000016_03555967_03558776 C1H1ORF43, CUNH1ORF43 coding downstream 303979 3555300 ~ 3559186 (-)
CI01000016_03322103_03326683 NA coding downstream 532403 3322003 ~ 3330762 (-)
CI01000016_03921124_03930996 NA coding upstream 17297 3920055 ~ 3931162 (-)
CI01000016_04044171_04047247 TRIM108 coding upstream 141257 4044015 ~ 4047305 (-)
CI01000016_04084854_04101874 PIANP coding upstream 181966 4084724 ~ 4101953 (-)
CI01000016_04181435_04188590 FLOT1B, FLOT1, FLOT1A coding upstream 278505 4181263 ~ 4188590 (-)
CI01000016_04226585_04232287 NA coding upstream 323681 4226439 ~ 4232287 (-)
G96629 NA non-coding downstream 30603 3831525 ~ 3832562 (-)
G96675 NA non-coding downstream 42537 3819667 ~ 3820628 (-)
G96672 NA non-coding downstream 51666 3809510 ~ 3811499 (-)
G96612 NA non-coding downstream 71362 3787406 ~ 3791803 (-)
G96622 NA non-coding downstream 76390 3780804 ~ 3786775 (-)
G96719 NA non-coding upstream 64584 3967342 ~ 3967897 (-)
G96728 NA non-coding upstream 66753 3969511 ~ 3971844 (-)
G96729 NA non-coding upstream 71049 3973807 ~ 3974048 (-)
G96723 NA non-coding upstream 77946 3980704 ~ 3984004 (-)
G96724 NA non-coding upstream 84044 3986802 ~ 3988814 (-)
G95070 NA other downstream 877524 2985260 ~ 2985641 (-)
G94786 NA other downstream 1586890 2270836 ~ 2276275 (-)
CI01000016_04921091_04922518 NA other upstream 1009950 4918975 ~ 4922518 (-)
CI01000016_05325805_05330265 COX6B2 other upstream 1422761 5325519 ~ 5332874 (-)
CI01000016_05412782_05415867 NA other upstream 1509501 5412248 ~ 5415906 (-)
G97341 NA other upstream 2256228 6158986 ~ 6159721 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 4986075 8888833 ~ 8894737 (-)

Expression


Co-expression Network