Item | Value |
---|---|
gene id | G96742 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000016 |
NCBI id | null |
chromosome length | 12175457 |
location | 4003345 ~ 4065351 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU110071 | False | 424 | lncRNA | 0.40 | 2 | 4003345 | 4065351 |
TU110067 | False | 2457 | lncRNA | 0.40 | 3 | 4062725 | 4065351 |
TU110068 | False | 2607 | lncRNA | 0.41 | 2 | 4062725 | 4065351 |
TU110069 | False | 1111 | lncRNA | 0.43 | 6 | 4062725 | 4065351 |
TU110070 | False | 2425 | lncRNA | 0.41 | 4 | 4062725 | 4065351 |
TU110072 | True | 2176 | lncRNA | 0.41 | 3 | 4062725 | 4065351 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000016_03921124_03930996 | NA | coding | downstream | 72183 | 3920055 ~ 3931162 (-) |
CI01000016_03881771_03883341 | NA | coding | downstream | 119879 | 3880493 ~ 3883466 (-) |
CI01000016_03834829_03843163 | ZNF687 | coding | downstream | 160079 | 3834500 ~ 3843266 (-) |
CI01000016_03719404_03722988 | NA | coding | downstream | 280287 | 3719167 ~ 3723058 (-) |
CI01000016_03647744_03675574 | NA | coding | downstream | 327760 | 3647653 ~ 3675585 (-) |
CI01000016_04084854_04101874 | PIANP | coding | upstream | 19373 | 4084724 ~ 4101953 (-) |
CI01000016_04181435_04188590 | FLOT1B, FLOT1, FLOT1A | coding | upstream | 115912 | 4181263 ~ 4188590 (-) |
CI01000016_04226585_04232287 | NA | coding | upstream | 161088 | 4226439 ~ 4232287 (-) |
CI01000016_04264738_04270463 | ABHD16A | coding | upstream | 198578 | 4263929 ~ 4272171 (-) |
CI01000016_04277441_04297655 | NA | coding | upstream | 211607 | 4276958 ~ 4298217 (-) |
G96736 | NA | non-coding | downstream | 10522 | 3992611 ~ 3992823 (-) |
G96724 | NA | non-coding | downstream | 14531 | 3986802 ~ 3988814 (-) |
G96723 | NA | non-coding | downstream | 19341 | 3980704 ~ 3984004 (-) |
G96729 | NA | non-coding | downstream | 29297 | 3973807 ~ 3974048 (-) |
G96728 | NA | non-coding | downstream | 31501 | 3969511 ~ 3971844 (-) |
G96788 | NA | non-coding | upstream | 184 | 4065535 ~ 4065881 (-) |
G96789 | NA | non-coding | upstream | 3002 | 4068353 ~ 4068554 (-) |
G96793 | NA | non-coding | upstream | 52946 | 4118297 ~ 4120351 (-) |
G96792 | NA | non-coding | upstream | 55165 | 4120516 ~ 4122375 (-) |
G96810 | NA | non-coding | upstream | 117150 | 4182501 ~ 4182967 (-) |
G95070 | NA | other | downstream | 1017704 | 2985260 ~ 2985641 (-) |
G94786 | NA | other | downstream | 1727070 | 2270836 ~ 2276275 (-) |
CI01000016_04921091_04922518 | NA | other | upstream | 847357 | 4918975 ~ 4922518 (-) |
CI01000016_05325805_05330265 | COX6B2 | other | upstream | 1260168 | 5325519 ~ 5332874 (-) |
CI01000016_05412782_05415867 | NA | other | upstream | 1346908 | 5412248 ~ 5415906 (-) |
G97341 | NA | other | upstream | 2093635 | 6158986 ~ 6159721 (-) |
CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 4823482 | 8888833 ~ 8894737 (-) |