G95692


Basic Information

Item Value
gene id G95692
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4814181 ~ 4927792 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108838
ATTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTGAAAGGTTTCTCAGTTTTTATTCCACCGTTTTTACATGATAATTGTTTATCGCAGCACCAGGCACGACATCTAACCCTCAGACAGGAACACAAGTCATGAGGAGAGAGGCAATTCCTGGAACCACTCAAGACTACTGGAAGATGACAATGTTCACAAAAGCCCATCAGACAAGACAGTACGAACACAAACACCAGGACAAAGCAGCAGAAAAAAAAACACCTCAACATATAACCATATCCATCAGCATTTGAAAGTTACGGTTGGTTATAATACATTCAGCAATTAAAATAAAGAAAGTGATCGGCCCCTTATGATTTCCATTCTCTGCTTATTAGAAACTGAGCCATGCAAGGACCACCCACACCCATTCCTTGTCTTTAGTTACAAGGTTGGATTTTATCCACCGTATAAATCTTTTAGTCAGATACCCCTGGTTCCTAAAGCACATATGATTTACTTGAAAGGGTGAAGGAGAGAATTAATTCCAAAAATAAGAAAAGCACTGTACAAAATAACTGAAACACTAATTCAATGTTTATCACAAAGAATTTCCTGCAAAGAAAGTATCCAAAACAATAAATCTTATGGAATTATTTTAAAGGTACGTAACATTGTTTGAAGCACCTACCCTTATCTCAGAAAAGAGACAGGGTATGTACTATGGAGGATCATTAACAGAGAACGAACCCAAAATTAACCCATATTGTTTCTTTCAACAAACAAACGAGCAGTTGCCAACATCTGAAGAGCTATATAGCCTGCTTTCGAGAAATCTTCTGTTCCCTACACAAAGGTCACAAGAAAGTCTTGGTCAATCAAACCATGATAGCAGCACACATCCGTTTGTATGTACACTTCAACAACCGCTACTCATCAGGAGTCATTGAGATCAACATTACACTGCAAAATAACGGGCTTGTTCATATATGTACAGACTTTGGAATGTACTAAACATTTTGCGTAAAGAGGATAAATCACAATTTAACAAGACAGTTGACCCCAAAATGAGAATTCTGTCATTATACCTTCATGTCATTACAAACCTGTATGACTATTTATTCTGTGGAACACCAATAAAGATTTTGGGGTTCAGTGTTGTTTTGGTTCAATATTTGAAAGAAAAAAATTGTTGAAACATTCTTCAAAGAAACAGTCATACAATATTTGGAACTACATGAGGAATGGCTTGACAGAATTTTCATTTTTGGATGAACTATCCCTTTAAGCTGGATCTAACAGTCCTCAATAAACAATCTATTTTTGTAGTAACAAGGGAGCAGTAATGCATAATGACAGGAAGCATGCGATGTTGTGTGTGATATCTACGTGTGTGTCTATTAAACAGTCATGAGTGTTCCTGAGGGTGTTTATATCTCAATAAAGCTCTAAGTGTAGAGCATAAAGGATGAGACATCTGTTATTGCGCAGGAAAGGGTGTTTATGCTATATTTCATGTTTGCATTCATGGAACCTGTTTATCTAAAAGGGATTTGATGCGTTCATGCAAGGGCTGGCACACCCTCTGGTAGGCCTGCGGCGTGAGGTGCAGGTAATCATACATGTCCTGGTGTGCGATGGAACCGTCAGATTGAATGAACCCAGGGTCCATGTCCAGAAAAGAGACATGAGACAAAGACGCTACCTCAGCCTCAACTTGAGCATTCACACTCGCGTTACGCTCACGGAGAGGGTTTGGACTTTTACCTCTCGGCAG
>TU108839
TGTTTTTTTTTTTTTTTTTTTGAAAGGTTTCTCAGTTTTTATTCCACCGTTTTTACATGATAATTGTTTATCGCAGCACCAGGCACGACATCTAACCCTCAGACAGGAACACAAGTCATGAGGAGAGAGGCAATTCCTGGAACCACTCAAGACTACTGGAAGATGACAATGTTCACAAAAGCCCATCAGACAAGACAGTACGAACACAAACACCAGGACAAAGCAGCAGAAAAAAAAACACCTCAACATATAACCATATCCATCAGCATTTGAAAGTTACGGTTGGTTATAATACATTCAGCAATTAAAATAAAGAAAGTGATCGGCCCCTTATGATTTCCATTCTCTGCTTATTAGAAACTGAGCCATGCAAGGACCACCCACACCCATTCCTTGTCTTTAGTTACAAGGTTGGATTTTATCCACCGTATAAATCTTTTAGTCAGATACCCCTGGTTCCTAAAGCACATATGATTTACTTGAAAGGGTGAAGGAGAGAATTAATTCCAAAAATAAGAAAAGCACTGTACAAAATAACTGAAACACTAATTCAATGTTTATCACAAAGAATTTCCTGCAAAGAAAGTATCCAAAACAATAAATCTTATGGAATTATTTTAAAGGTACGTAACATTGTTTGAAGCACCTACCCTTATCTCAGAAAAGAGACAGGGTATGTACTATGGAGGATCATTAACAGAGAACGAACCCAAAATTAACCCATATTGTTTCTTTCAACAAACAAACGAGCAGTTGCCAACATCTGAAGAGCTATATAGCCTGCTTTCGAGAAATCTTCTGTTCCCTACACAAAGGTCACAAGAAAGTCTTGGTCAATCAAACCATGATAGCAGCACACATCCGTTTGTATGTACACTTCAACAACCGCTACTCATCAGGAGTCATTGAGATCAACATTACACTGCAAAATAACGGGCTTGTTCATATATGTACAGACTTTGGAATGTACTAAACATTTTGCGTAAAGAGGATAAATCACAATTTAACAAGACAGTTGACCCCAAAATGAGAATTCTGTCATTATACCTTCATGTCATTACAAACCTGTATGACTATTTATTCTGTGGAACACCAATAAAGATTTTGGGGTTCAGTGTTGTTTTGGTTCAATATTTGAAAGAAAAAAATTGTTGAAACATTCTTCAAAGAAACAGTCATACAATATTTGGAACTACATGAGGAATGGCTTGACAGAATTTTCATTTTTGGATGAACTATCCCTTTAAGCTGGATCTAACAGTCCTCAATAAACAATCTATTTTTGTAGTAACAAGGGAGCAGTAATGCATAATGACAGGAAGCATGCGATGTTGTGTGTGATATCTACGTGTGTGTCTATTAAACAGTCATGAGTGTTCCTGAGGGTGTTTATATCTCAATAAAGCTCTAAGTGTAGAGCATAAAGGATGAGACATCTGTTATTGCGCAGGAAAGGGTGTTTATGCTATATTTCATGTTTGCATTCATGGAACCTGTTTATCTAAAAGGGATTTGATGCGTTCATGCAAGGGCTGGCACACCCTCTGGTAGGCCTGCGGCGTGAGGTGCAGGTAATCATACATGTCCTGGTGTGCGATGGAACCGTCAGATTGAATGAACCCAGGGTCCATGTCCAGAAAAGAGACATGAGACAAAGACGCTACCTCAGCCTCAACTTGAGCATTCACACTCGCGTTACGCTCACGGAGAGGGTTTGGACTTTTACCTCTCGGCAG
>TU108840
ACTTCAATTCATCCAGCGGAGACTGACAGACTCTCAAGCACGTTTTCTGAAAGCAATCCTAAGCACCAGGCACGACATCTAACCCTCAGACAGGAACACAAGTCATGAGGAGAGAGGCAATTCCTGGAACCACTCAAGACTACTGGAAGATGACAATGTTCACAAAAGCCCATCAGACAAGACAGTACGAACACAAACACCAGGACAAAGCAGCAGAAAAAAAAACACCTCAACATATAACCATATCCATCAGCATTTGAAAGTTACGGTTGGTTATAATACATTCAGCAATTAAAATAAAGAAAGTGATCGGCCCCTTATGATTTCCATTCTCTGCTTATTAGAAACTGAGCCATGCAAGGACCACCCACACCCATTCCTTGTCTTTAGTTACAAGGTTGGATTTTATCCACCGTATAAATCTTTTAGTCAGATACCCCTGGTTCCTAAAGCACATATGATTTACTTGAAAGGGTGAAGGAGAGAATTAATTCCAAAAATAAGAAAAGCACTGTACAAAATAACTGAAACACTAATTCAATGTTTATCACAAAGAATTTCCTGCAAAGAAAGTATCCAAAACAATAAATCTTATGGAATTATTTTAAAGGTACGTAACATTGTTTGAAGCACCTACCCTTATCTCAGAAAAGAGACAGGGTATGTACTATGGAGGATCATTAACAGAGAACGAACCCAAAATTAACCCATATTGTTTCTTTCAACAAACAAACGAGCAGTTGCCAACATCTGAAGAGCTATATAGCCTGCTTTCGAGAAATCTTCTGTTCCCTACACAAAGGTCACAAGAAAGTCTTGGTCAATCAAACCATGATAGCAGCACACATCCGTTTGTATGTACACTTCAACAACCGCTACTCATCAGGAGTCATTGAGATCAACATTACACTGCAAAATAACGGGCTTGTTCATATATGTACAGACTTTGGAATGTACTAAACATTTTGCGTAAAGAGGATAAATCACAATTTAACAAGACAGTTGACCCCAAAATGAGAATTCTGTCATTATACCTTCATGTCATTACAAACCTGTATGACTATTTATTCTGTGGAACACCAATAAAGATTTTGGGGTTCAGTGTTGTTTTGGTTCAATATTTGAAAGAAAAAAATTGTTGAAACATTCTTCAAAGAAACAGTCATACAATATTTGGAACTACATGAGGAATGGCTTGACAGAATTTTCATTTTTGGATGAACTATCCCTTTAAGCTGGATCTAACAGTCCTCAATAAACAATCTATTTTTGTAGTAACAAGGGAGCAGTAATGCATAATGACAGGAAGCATGCGATGTTGTGTGTGATATCTACGTGTGTGTCTATTAAACAGTCATGAGTGTTCCTGAGGGTGTTTATATCTCAATAAAGCTCTAAGTGTAGAGCATAAAGGATGAGACATCTGTTATTGCGCAGGAAAGGGTGTTTATGCTATATTTCATGTTTGCATTCATGGAACCTGTTTATCTAAAAGGGATTTGATGCGTTCATGCAAGGGCTGGCACACCCTCTGGTAGGCCTGCGGCGTGAGGTGCAGGTAATCATACATGTCCTGGTGTGCGATGGAACCGTCAGATTGAATGAACCCAGGGTCCATGTCCAGAAAAGAGACATGAGACAAAGACGCTACCTCAGCCTCAACTTGAGCATTCACACTCGCGTTACGCTCACGGAGAGGGTTTGGACTTTTACCTCTCGGCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108838 False 1754 lncRNA 0.38 3 4814181 4927792
TU108839 False 1736 lncRNA 0.38 2 4892096 4927792
TU108840 True 1723 lncRNA 0.39 2 4924686 4927792

Neighbor

gene id symbol gene type direction distance location
CI01000016_04770017_04795909 NA coding upstream 16672 4770017 ~ 4797509 (+)
CI01000016_04743905_04763216 GRIK5 coding upstream 50674 4743821 ~ 4763507 (+)
CI01000016_04666701_04684512 NA coding upstream 129344 4665922 ~ 4684837 (+)
CI01000016_04649660_04661928 GSK3A, GSK3A.S, GSK3AA, GSK3AB coding upstream 150626 4649578 ~ 4663555 (+)
CI01000016_04590667_04633139 CIC, CICB coding upstream 179731 4590667 ~ 4634450 (+)
CI01000016_04932388_04935392 NA coding downstream 4137 4931929 ~ 4935904 (+)
CI01000016_04969263_04970446 CXCR3.2 coding downstream 40710 4968502 ~ 4970632 (+)
CI01000016_04981918_04985412 NA coding downstream 53818 4981610 ~ 4985635 (+)
CI01000016_05064542_05068162 NA coding downstream 135122 5062914 ~ 5068810 (+)
CI01000016_05100744_05111181 P3H3 coding downstream 172952 5100744 ~ 5111389 (+)
G95489 NA non-coding upstream 260171 4547513 ~ 4554010 (+)
G95485 NA non-coding upstream 268109 4537680 ~ 4546072 (+)
G95673 NA non-coding upstream 297087 4516876 ~ 4517094 (+)
CI01000016_04428669_04441464 DEDD1 non-coding upstream 370534 4428669 ~ 4441464 (+)
G95659 NA non-coding upstream 395567 4417888 ~ 4418614 (+)
G95718 NA non-coding downstream 34458 4962250 ~ 4962586 (+)
G95751 NA non-coding downstream 52309 4980101 ~ 4980313 (+)
G95726 NA non-coding downstream 129204 5056996 ~ 5088557 (+)
G95731 NA non-coding downstream 132379 5060171 ~ 5091009 (+)
G95648 NA other upstream 540276 4272636 ~ 4273905 (+)
G95439 NA other upstream 950324 3862175 ~ 3862305 (+)
G93406 NA other upstream 3886649 905400 ~ 927532 (+)
G95792 NA other downstream 292088 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 478077 5405791 ~ 5407963 (+)
G96389 NA other downstream 2232849 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2856273 7783987 ~ 7784996 (+)
G97824 NA other downstream 3086571 8014363 ~ 8015775 (+)

Expression


Co-expression Network