G95726


Basic Information

Item Value
gene id G95726
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5056996 ~ 5088557 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108878
TTTAGTGATATTAACTTGTCATTAAACATTTTGCAGAAACATTCTGGAACACATGAAGGGAAGGAAGGTGGAGCTTAGCTCTAGAAGCAATGATGTCACAATAGACACAAACCAATCAGGGGGAGGCACGAAGGAGACTAGAGTGTGTGGTAAGGCATTGTACAACATATGGGCGTTTCGAGTAAGAACTCTAATCCGCACATCCTACATCTCTTTTTTTTCCTTCCATCTTTATTATGTCCGATTTCTCTCGGTAGTGAATAAATTCGATGGAGAAGTGCTTTGACTTATTAAATGGCGCACCGGTTCAGAAGCAGGAGTTGGGCCTACTTTTTTTTTCCAATAGATCAGATAGAGAAGTGTGTGAGTGTGTGTGTGTCTGGGTGAAAGAGAGAAAGATACTATTCTAGTTCACTTTATTCCACCACTCTCCTGTAAAAGTACAGGTAGCCCAGGTCCTTAGGTGGTTTCTCAGAGGCACAAACTTTCTGATCGTTAAAGATTACCCACCTGAAAGAAACAAACACAGACAATATAATATTACTGAGAAGAAAATACTGAGATGATATTGTTGTACAAGAGCTGCATATGAATAATGATAGCGGGAGTAGAGTCAGCTGATGGAGAGAGAACTTCACTCACTGTTGGTCCTTCTTGATGTGGCAGACATAATGACCACACATTGTGCTCGATCCCATGTGACTGATGAACGCAAAAAGCTCATACTCTTCAGGACAAAAAATGAGAAAGGATTTGAATCATTAGAAGAGAGCATAATATTAAAAAAAAAATAATAATAATAAATTGATAAATGCCACACAAACACACTTACTTCCTGGTCCATCACGGACACGTGGTCCTGGAGGAGGTTCCCGACTGGCTTCACTTCCTCCCTCTGAGCGTCCACCCTCAGACACATCCATGGACTCCAGATCATCCAGATGAGAGAAGATCCAGTCCACCGCACGCTCTAGAATATTATTCTGCAAATACAGAAATTCACAAAAGAGGGCT

Function

NR:

description
probable methyltransferase TARBP1

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108878 True 1014 lncRNA 0.41 2 5056996 5088557

Neighbor

gene id symbol gene type direction distance location
CI01000016_04981918_04985412 NA coding upstream 71361 4981610 ~ 4985635 (+)
CI01000016_04969263_04970446 CXCR3.2 coding upstream 86364 4968502 ~ 4970632 (+)
CI01000016_04932388_04935392 NA coding upstream 121092 4931929 ~ 4935904 (+)
CI01000016_04911596_04920356 NA coding upstream 136177 4910169 ~ 4920819 (+)
CI01000016_04893170_04904103 NA coding upstream 152737 4893133 ~ 4904259 (+)
CI01000016_05100744_05111181 P3H3 coding downstream 12187 5100744 ~ 5111389 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding downstream 26869 5115426 ~ 5122712 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding downstream 104225 5192782 ~ 5204759 (+)
CI01000016_05229439_05231984 NA coding downstream 140782 5229339 ~ 5233159 (+)
CI01000016_05335334_05352325 RASIP1 coding downstream 246777 5335334 ~ 5352667 (+)
G95751 NA non-coding upstream 76683 4980101 ~ 4980313 (+)
G95718 NA non-coding upstream 94410 4962250 ~ 4962586 (+)
G95692 NA non-coding upstream 129204 4814181 ~ 4927792 (+)
G95703 NA non-coding upstream 204032 4852041 ~ 4852964 (+)
G95785 NA non-coding downstream 35667 5124224 ~ 5127893 (+)
G95737 NA non-coding downstream 115330 5203887 ~ 5206127 (+)
G95793 NA non-coding downstream 144639 5233196 ~ 5325915 (+)
G95844 NA non-coding downstream 167958 5256515 ~ 5256900 (+)
G95845 NA non-coding downstream 168044 5256601 ~ 5258167 (+)
CI01000016_04829592_04837305 NA other upstream 220341 4829592 ~ 4837457 (+)
G95648 NA other upstream 783091 4272636 ~ 4273905 (+)
G95439 NA other upstream 1193139 3862175 ~ 3862305 (+)
G93406 NA other upstream 4129464 905400 ~ 927532 (+)
G95792 NA other downstream 131323 5219880 ~ 5225941 (+)
CI01000016_05405791_05407797 AICDA other downstream 317312 5405791 ~ 5407963 (+)
G96389 NA other downstream 2072084 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2695508 7783987 ~ 7784996 (+)
G97824 NA other downstream 2925806 8014363 ~ 8015775 (+)

Expression


Co-expression Network