Gene
RNA
| Item | Value |
|---|---|
| gene id | G97045 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 5067684 ~ 5073528 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU110421 | True | 1119 | lncRNA | 0.33 | 2 | 5067684 | 5073528 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_05057407_05062686 | NA | coding | downstream | 4914 | 5057226 ~ 5062770 (-) |
| CI01000016_05052905_05056425 | NA | coding | downstream | 11259 | 5052375 ~ 5056425 (-) |
| CI01000016_05037135_05040030 | NA | coding | downstream | 26320 | 5037135 ~ 5041364 (-) |
| CI01000016_05011639_05013290 | NA | coding | downstream | 54394 | 5009773 ~ 5013290 (-) |
| CI01000016_04995532_04996727 | NA | coding | downstream | 70957 | 4994812 ~ 4996727 (-) |
| CI01000016_05086983_05098757 | UBP5, USP5 | coding | upstream | 13285 | 5086813 ~ 5098757 (-) |
| CI01000016_05124385_05128589 | CDCA3 | coding | upstream | 50731 | 5124259 ~ 5128975 (-) |
| CI01000016_05131457_05146340 | PEX5 | coding | upstream | 57220 | 5130748 ~ 5146340 (-) |
| CI01000016_05151082_05166013 | CLSTN3 | coding | upstream | 77529 | 5151057 ~ 5166013 (-) |
| CI01000016_05170621_05189845 | LPCAT3 | coding | upstream | 96186 | 5169714 ~ 5189845 (-) |
| G97037 | NA | non-coding | downstream | 96904 | 4969389 ~ 4970780 (-) |
| G97101 | NA | non-coding | downstream | 100382 | 4967002 ~ 4967302 (-) |
| G97100 | NA | non-coding | downstream | 101378 | 4966094 ~ 4966306 (-) |
| G97098 | NA | non-coding | downstream | 103053 | 4964408 ~ 4964631 (-) |
| G97097 | NA | non-coding | downstream | 104040 | 4962586 ~ 4963644 (-) |
| G97135 | NA | non-coding | upstream | 49552 | 5123080 ~ 5123476 (-) |
| G97139 | NA | non-coding | upstream | 117498 | 5191026 ~ 5191428 (-) |
| G97012 | NA | non-coding | upstream | 119264 | 5192792 ~ 5204813 (-) |
| G97148 | NA | non-coding | upstream | 267511 | 5341039 ~ 5341800 (-) |
| CI01000016_05374626_05378364 | NA | non-coding | upstream | 271873 | 5373845 ~ 5386465 (-) |
| CI01000016_04921091_04922518 | NA | other | downstream | 144280 | 4918975 ~ 4922518 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 1136633 | 3920055 ~ 3931162 (-) |
| CI01000016_03647744_03675574 | NA | other | downstream | 1402371 | 3647653 ~ 3675585 (-) |
| G95070 | NA | other | downstream | 2082043 | 2985260 ~ 2985641 (-) |
| G94786 | NA | other | downstream | 2791409 | 2270836 ~ 2276275 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | upstream | 251991 | 5325519 ~ 5332874 (-) |
| CI01000016_05412782_05415867 | NA | other | upstream | 338731 | 5412248 ~ 5415906 (-) |
| G97341 | NA | other | upstream | 1085458 | 6158986 ~ 6159721 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 3815305 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 3863261 | 8925960 ~ 8945229 (-) |
