G95793


Basic Information

Item Value
gene id G95793
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5233196 ~ 5325915 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108948
TTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTATCAATTCAAATTGTGCGTTTTATTTTGTAAATTGCAACAGTAAGATGTAGTGACACAAAGCGTGATGCTAATGTAGGACCTCAAAATGCTAAAGGTCAAAAGGTCACATGATTCCAAGTTGCACTCTGAATGACCTTTCATCCTCCAGCGGGCAAACCAATAACTAAGACAACATCAAAATTGGATAATTATTATGAGGTACTCTACAAAATGTTGGGAGTCCATGAATTGAAGGTAACAGAGACCATTTAGATCTTTCCAGGGAAGCTTCCATCCTCAATCTGTCCATCCCATTTCTCCACCTGAAGGAAGGAAAGAACAAAGACAAGAACACATTGTATTTCAAACATAATTCACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108948 True 408 lncRNA 0.33 3 5233196 5325915

Neighbor

gene id symbol gene type direction distance location
CI01000016_05229439_05231984 NA coding upstream 37 5229339 ~ 5233159 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding upstream 28437 5192782 ~ 5204759 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding upstream 110484 5115426 ~ 5122712 (+)
CI01000016_05100744_05111181 P3H3 coding upstream 121807 5100744 ~ 5111389 (+)
CI01000016_05064542_05068162 NA coding upstream 164386 5062914 ~ 5068810 (+)
CI01000016_05335334_05352325 RASIP1 coding downstream 9419 5335334 ~ 5352667 (+)
CI01000016_05381573_05383796 NA coding downstream 55002 5380917 ~ 5383818 (+)
CI01000016_05388832_05396460 ZNF628 coding downstream 62917 5388832 ~ 5397080 (+)
CI01000016_05398036_05400369 NAT14 coding downstream 72121 5398036 ~ 5400406 (+)
CI01000016_05405791_05407797 AICDA coding downstream 79876 5405791 ~ 5407963 (+)
G95737 NA non-coding upstream 27069 5203887 ~ 5206127 (+)
G95785 NA non-coding upstream 105303 5124224 ~ 5127893 (+)
G95731 NA non-coding upstream 142187 5060171 ~ 5091009 (+)
G95726 NA non-coding upstream 144639 5056996 ~ 5088557 (+)
G95751 NA non-coding upstream 252883 4980101 ~ 4980313 (+)
G95814 NA non-coding downstream 1696 5327611 ~ 5329658 (+)
G95824 NA non-coding downstream 45413 5371328 ~ 5375267 (+)
G95871 NA non-coding downstream 85567 5411482 ~ 5411703 (+)
G95803 NA non-coding downstream 86323 5412238 ~ 5418215 (+)
G95876 NA non-coding downstream 95252 5421167 ~ 5421768 (+)
G95792 NA other upstream 7255 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 396541 4829592 ~ 4837457 (+)
G95648 NA other upstream 959291 4272636 ~ 4273905 (+)
G95439 NA other upstream 1369339 3862175 ~ 3862305 (+)
G93406 NA other upstream 4305664 905400 ~ 927532 (+)
G96389 NA other downstream 1834726 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2458150 7783987 ~ 7784996 (+)
G97824 NA other downstream 2688448 8014363 ~ 8015775 (+)
G98288 NA other downstream 3670183 8996098 ~ 9002717 (+)

Expression


Co-expression Network