G95814


Basic Information

Item Value
gene id G95814
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5327611 ~ 5329658 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108974
TAGACAATTTTGTGGAGGCTTTTTGGCACTACCTTCACACGTTGCTTGCATACTATTTCAGAAAGTGATTAAGAAAATAGACCTGAACGACTATTCAGGCTCTATTCGAGCAAAGAGAAAATACGGATGAAGATTTTAAATGGAAGACAGTCAATATATTTGCTTATGATTCAAGTCAAATTTATATGTCAATTTTTCGTGAGAAGTGCTCCTGTGTGTATAAGCACGAATAATCCACAATCTAATTAGACTCATTGTTACAAAAGATTTCTATTTCAAATAAATGCTGTTCTTATGAACTTTCCATTCAAAGAATCATGTAAACGCACGGTTTAAACAAAAATATTAAGCTGCAAAACTAATAAGAACAGAATGTTTTAAAACCAAAAACAGTCATTTTTAAATTTTAATAATTTACAGTATTACAGTTATACAGTATATTACACCAATTAATGCAGCCTTGTGCAGAAAAATCTTCTTTCCAAAACATTAACAATGAACGGTAGTGCAATTTAAGTGTAGGAGAAAACAGTAGCGGAATTAACATTAAGTGTGCATCTTACGAACAGAAACCATTGGCACATGCCGCTATGCTTAGGGGCACATCCGGTTTTCATTGGTATGTGTCAGCAGATAGTGGCATGTGCAGCTGACAATTTTGCAGAACATGGTGCCGTATGTTGAGGCACCTCCAGTAGTGACTGACAGTCAAATTAAACAGATATACTGATGTAATTGTGACACAAAATCCTAAATAGCCTAATTTAGTGATTTAAAAAAAAAAAAAAAAAAAAAGTAGCAGCAATTAAACGCGTTTACAAATAGGTCATATTTTTCAAACACGTAGTCAATTTGTGGCACATTTGTATTTATGTAATACCAGTGCTACTGTATGTTGATGATGCAATTCGAGGAAACACACGAAATAAATCTATAATGGGTCACTACGAATACCGCATTAACATTCACATCCATTACTGTAAACCTTTATTTTTGCATGATGCTGCAGGCACGCCGGTAGGTGTCAGTACAAGTAAGTGTAACATTGGCCAGCACGAGATAAACCAAAACTTATGACAGTTGAGGAAGATCCACGGGTGGTGTTTTTGTTATTTGTTTGTGAGTTAGATGGTAGCAAAATCAAAAAACATAATCAGAGTCTGATACTGATCAAAATAAATTTAGATATAAATTAATTTGTGGTTAGTGGTTCTCATCTATGGCTTTAATATTTCACAAATAAGTTTATGGAATTACGTCATAAGAAATAAAAGCGGTTTTAACAATGTGAACATGCTTTCCTTCTGGAGATGCCTAAATGTTTTGATAAAGTATTTGACTTGCTGTAATATAATAATTTAATATAATATCTACAGACCTACATTACTCTGCATTGTGAAGAGCCGGTGTCAAGGTCCAGCACACTTCTGAATGGTTGGTGCCAGTTTTCATAATGCATTTCAAAATGGTAGATGTCACTTTGTGCCATTTTCTCTTATTGTAGTTTACAATATGAAATACCTGATTGGTAAGTGTCCATTTGTGATGGCACACCCCTGCTGGTTTCACTTTTTTAGTTGTGGCCACCTATGTAAATAGTGTCTATAATCTTTTATAATTCCAAATGACACAGCTGAACTGTCAATCCTATGCAAATAGAAAAAAAATGTGTTGAATTATCAAAACAATATGCATCTAAATACACTGTATAAAAAATAATAATAAAAAAATATAATTATATATATATATATATATAAAACAAAGAAAAACTATTAATAAAAATGAATAGTAAAAACAGAGGGCTTAGTGATGTCAGCGAAAAGGGAAATTTCAGAGGTAGAGCGATTTATTTTAATGAGACGCACACTGATAAATGTGCATTACATAAATGGCTCAATGTGGATTTTATGTTGACTACAGTGTTATAACTTAGTTATTCAGACAGACTCACCCAGCTCATTGGACACAGGCTCTTGTACACTCTCTGATACCATTCGCAGGGAGAAGTTTCCTGCCCTTTGCTT

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108974 True 2024 lncRNA 0.33 2 5327611 5329658

Neighbor

gene id symbol gene type direction distance location
CI01000016_05229439_05231984 NA coding upstream 94452 5229339 ~ 5233159 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding upstream 122852 5192782 ~ 5204759 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding upstream 204899 5115426 ~ 5122712 (+)
CI01000016_05100744_05111181 P3H3 coding upstream 216222 5100744 ~ 5111389 (+)
CI01000016_05064542_05068162 NA coding upstream 258801 5062914 ~ 5068810 (+)
CI01000016_05335334_05352325 RASIP1 coding downstream 5676 5335334 ~ 5352667 (+)
CI01000016_05381573_05383796 NA coding downstream 51259 5380917 ~ 5383818 (+)
CI01000016_05388832_05396460 ZNF628 coding downstream 59174 5388832 ~ 5397080 (+)
CI01000016_05398036_05400369 NAT14 coding downstream 68378 5398036 ~ 5400406 (+)
CI01000016_05405791_05407797 AICDA coding downstream 76133 5405791 ~ 5407963 (+)
G95793 NA non-coding upstream 1696 5233196 ~ 5325915 (+)
G95845 NA non-coding upstream 69444 5256601 ~ 5258167 (+)
G95844 NA non-coding upstream 70711 5256515 ~ 5256900 (+)
G95737 NA non-coding upstream 121484 5203887 ~ 5206127 (+)
G95785 NA non-coding upstream 199718 5124224 ~ 5127893 (+)
G95824 NA non-coding downstream 41670 5371328 ~ 5375267 (+)
G95871 NA non-coding downstream 81824 5411482 ~ 5411703 (+)
G95803 NA non-coding downstream 82580 5412238 ~ 5418215 (+)
G95876 NA non-coding downstream 91509 5421167 ~ 5421768 (+)
G95880 NA non-coding downstream 95711 5425369 ~ 5434373 (+)
G95792 NA other upstream 101670 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 490956 4829592 ~ 4837457 (+)
G95648 NA other upstream 1053706 4272636 ~ 4273905 (+)
G95439 NA other upstream 1463754 3862175 ~ 3862305 (+)
G93406 NA other upstream 4400079 905400 ~ 927532 (+)
G96389 NA other downstream 1830983 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2454407 7783987 ~ 7784996 (+)
G97824 NA other downstream 2684705 8014363 ~ 8015775 (+)
G98288 NA other downstream 3666440 8996098 ~ 9002717 (+)

Expression


Co-expression Network