G95824


Basic Information

Item Value
gene id G95824
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5371328 ~ 5375267 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108984
ACGCAAGAAGAGGGGGCAGAGAGGGCCCAGAGAGTATGGAAAGACTAGCCCATCCTGTAGATCGTTACTTTTTGCCAAGCAGCTTGCATCAGAGTGTGTTTGTGTGCGTCAGGGTAATATCTGCACACTCCTGCCAAGCTCCTAAGGACCGGAAGATAGCTACTGCCAGCCATTAACACACTCAGTTGCTCTCTGACGTCTGTAGAGGGGTGCACGGGTTGGGAAAGGTGAAGGGGTCTTGCCAGATCGTGGTTGGTCAGGACACACCTCTTTCTTCTCTGCCATACAAAGAGTGGGAGCAGTTAGCGAGGGTCAAAGGACATGAACAACATCCTGTCTGTCATAAGAATTATCTGTCTTTTTCACTGTATTTATACATCCTCCCACACACGCACACACATTCATCTGCAGTCACTCTCACTCTTTTTTCCTTATTTCTTTCTCAACACCTCTGAAATTCCCTTCGGGGTTTAGAGAAATGATTCAATTATATCAGATCATGCTTTTGCAGGTATTTAGTGTCATATGATGCTCTGCCAACTATTGATATTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGGTTCAAGTATACCATACGTTATGGGAACAAAATGTTCCCACAAAGATGGCAATATCCAAAATCCTTGTCCTTGTGGGGACATTTTTTGTTCCCCTTGAGGAAAACCGCATATAAATCATACAAAATTTTTTTTTTTTTTTTTTTTTTTTTAAATGTAAAAATCCAGAAAGTTTTCTGTGATAGGTTTAGGGTTAGGGGATAGAATATACAGTTTGTACAGTATAAAAATCATTATGTCTATGGAATGTCCCCATAAAACATGAAAACCCAACATGTGTGTGTGTGTTCATGACTGAGGTGGCGATATGCAGTCCTGCACGTAACAATCATAATTATATGGCCCGAAACACTGGAGAACAGAATATTAAACAAAGTTTGATTTATTTTACTGCTGAGTAATTTAAACATCCTCACTTTTATCAAGTCATGTTATTTCCTATTTAGACTGGTAGAAACTTGATCCGTAACACTGACTAATAAACTTATACTTATTCATTCCCAACACACACATTGTTAAACTAAAACATGCAGCATTTCTAAATGAGTGAAAACTAAATGGTTCCACAAATAATGGTTGTAATTGCACATGCAGCTTGGCAGTAAAAAACAAACTAGACTATATCCAAATGAATTATGGTGAACTGCTTTGAGGTTTTGGCTTGGGAAATGAAAGAGTGATTATGATTATGAATGCAGTGCAAAAGATTATCAAATGTTACCAAGTAAGTGCAGACTTGATATGACCTAAATTCTTTAAAAATATTTTACTTACATTTATGAATTTGGCAGGTGCTTTAATCTAAATGTATTCATTGCATATGTATATGTATACATTGCAGGTATACATTTTATCAGTTCATGGCATACATTCCCAGGGAACCGAATCTATGACTTCAGCTTTACTAGTGCCATATGAAAAAACTGGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108984 True 1518 lncRNA 0.38 3 5371328 5375267

Neighbor

gene id symbol gene type direction distance location
CI01000016_05335334_05352325 RASIP1 coding upstream 18661 5335334 ~ 5352667 (+)
CI01000016_05229439_05231984 NA coding upstream 138169 5229339 ~ 5233159 (+)
CI01000016_05192890_05204267 TPI1.S, TPI1, TPI, TPI1B, TPI1A coding upstream 166569 5192782 ~ 5204759 (+)
CI01000016_05117302_05122058 GNB3A, GNB3 coding upstream 248616 5115426 ~ 5122712 (+)
CI01000016_05100744_05111181 P3H3 coding upstream 259939 5100744 ~ 5111389 (+)
CI01000016_05381573_05383796 NA coding downstream 5650 5380917 ~ 5383818 (+)
CI01000016_05388832_05396460 ZNF628 coding downstream 13565 5388832 ~ 5397080 (+)
CI01000016_05398036_05400369 NAT14 coding downstream 22769 5398036 ~ 5400406 (+)
CI01000016_05405791_05407797 AICDA coding downstream 30524 5405791 ~ 5407963 (+)
CI01000016_05445824_05454816 EPN1 coding downstream 70557 5445824 ~ 5455416 (+)
G95814 NA non-coding upstream 41670 5327611 ~ 5329658 (+)
G95793 NA non-coding upstream 45413 5233196 ~ 5325915 (+)
G95845 NA non-coding upstream 113161 5256601 ~ 5258167 (+)
G95844 NA non-coding upstream 114428 5256515 ~ 5256900 (+)
G95737 NA non-coding upstream 165201 5203887 ~ 5206127 (+)
G95871 NA non-coding downstream 36215 5411482 ~ 5411703 (+)
G95803 NA non-coding downstream 36971 5412238 ~ 5418215 (+)
G95876 NA non-coding downstream 45900 5421167 ~ 5421768 (+)
G95880 NA non-coding downstream 50102 5425369 ~ 5434373 (+)
G95801 NA non-coding downstream 82575 5457842 ~ 5458207 (+)
G95792 NA other upstream 145387 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 534673 4829592 ~ 4837457 (+)
G95648 NA other upstream 1097423 4272636 ~ 4273905 (+)
G95439 NA other upstream 1507471 3862175 ~ 3862305 (+)
G93406 NA other upstream 4443796 905400 ~ 927532 (+)
G96389 NA other downstream 1785374 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2408798 7783987 ~ 7784996 (+)
G97824 NA other downstream 2639096 8014363 ~ 8015775 (+)
G98288 NA other downstream 3620831 8996098 ~ 9002717 (+)

Expression


Co-expression Network