G95831


Basic Information

Item Value
gene id G95831
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5494241 ~ 5494914 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU108991
AAGAAATGATTAGATTTACTAAATGAATAAACTAAATCTGGCGTGTTGTTGTTACATTTGGAGTTTTAGAGTTTTAATAATATAATGTATTGTTGGAAATGTGTACGGCGTACTTATATGTATGTATCTGGGTCAGCAGGAGGAACGGATCATGCATAATTATTTTTAAAGACAAAGCAGCATTCAGCTCACATACAGCCAAACAGTGATATTATTAATGACGGTTGACTTTCTGAGATGCCGTAAGAGTGGCTTAGTTTACCTAGTTCTGGTTTGTGATATTCATCAAACCTCTCACATAACAACACGCATAAACAGAGAGCCAGGGAGTTTCATTTGCCTCAGTTTGTAAGACCCAGAGGACTGTGATGATGTCTCTTGTAACAGTGCCATTGGTCCGACTGCCAGCTCTGTTAAGGAACAGTTCCACTCTCTACTTGAACCTGTCATAACAGATCATAACACGACACCCCTTTAGCTGAGAATGCAGAGCAGCAACTTTTTGGGCTATTTTTCCTGGCAAAGTTTAAAGGATTTGGCAAATTCAAAGAAAAGGCAACTAGTTTGGTTTCTGCATCGAACATTTAAATAGTGATAACTAAAAATTCTCAGTAGTTGGATGTTTGAATGTTATAAAGAGATGACCTGCTTTCATTCTCGGTTATGACTTCCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU108991 True 674 lncRNA 0.38 1 5494241 5494914

Neighbor

gene id symbol gene type direction distance location
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding upstream 10295 5475350 ~ 5483946 (+)
CI01000016_05445824_05454816 EPN1 coding upstream 38825 5445824 ~ 5455416 (+)
CI01000016_05405791_05407797 AICDA coding upstream 86278 5405791 ~ 5407963 (+)
CI01000016_05398036_05400369 NAT14 coding upstream 93835 5398036 ~ 5400406 (+)
CI01000016_05388832_05396460 ZNF628 coding upstream 97161 5388832 ~ 5397080 (+)
CI01000016_05698858_05706081 NA coding downstream 203944 5698858 ~ 5706719 (+)
CI01000016_05797506_05798075 NA coding downstream 302592 5797506 ~ 5799585 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding downstream 333484 5828398 ~ 5833377 (+)
CI01000016_05837368_05837667 NA coding downstream 341669 5836583 ~ 5837927 (+)
CI01000016_05878037_05885761 FLCN coding downstream 383123 5878037 ~ 5886192 (+)
G95804 NA non-coding upstream 27258 5466670 ~ 5466983 (+)
G95885 NA non-coding upstream 30984 5463028 ~ 5463257 (+)
G95884 NA non-coding upstream 31317 5462718 ~ 5462924 (+)
G95805 NA non-coding upstream 32099 5461890 ~ 5462142 (+)
G95801 NA non-coding upstream 36034 5457842 ~ 5458207 (+)
G95888 NA non-coding downstream 1729 5496643 ~ 5496842 (+)
G95889 NA non-coding downstream 3354 5498268 ~ 5498957 (+)
G95890 NA non-coding downstream 4444 5499358 ~ 5499655 (+)
G95891 NA non-coding downstream 4876 5499790 ~ 5500142 (+)
G95892 NA non-coding downstream 5503 5500417 ~ 5500794 (+)
G95792 NA other upstream 268300 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 657586 4829592 ~ 4837457 (+)
G95648 NA other upstream 1220336 4272636 ~ 4273905 (+)
G95439 NA other upstream 1630384 3862175 ~ 3862305 (+)
G96389 NA other downstream 1665727 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2289151 7783987 ~ 7784996 (+)
G97824 NA other downstream 2519449 8014363 ~ 8015775 (+)
G98288 NA other downstream 3501184 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 4300717 9795950 ~ 9842576 (+)

Expression


Co-expression Network