G96058


Basic Information

Item Value
gene id G96058
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5776060 ~ 5776310 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109256
GGCCAAATTGTGATGGCTAGACGACTGGGTCAGAGCATCTCCAAAACTGTAGCTCTTGTGGGGTGTTCCCGGTCTGCAGTGGTCAGTATCTATCAAAAGTGGTCCAAGGAAGGAACAGTGGTGAACCGGTGACAGGGTCATGGGCGGCCAAGGCTCATTGATGCACGTGGGGAGCAAAGGCTGGCCCGTGTGGTCCGATCCAACAGACGAGCTCCTGTAGCTCAAATTGCTCAAGAAGTTAATGCTGGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109256 True 251 lncRNA 0.54 1 5776060 5776310

Neighbor

gene id symbol gene type direction distance location
CI01000016_05698858_05706081 NA coding upstream 69341 5698858 ~ 5706719 (+)
CI01000016_05488887_05502270 CACNG6B coding upstream 273710 5484205 ~ 5504239 (+)
CI01000016_05475350_05482964 U2AF2, U2AF2A, U2AF2B coding upstream 292114 5475350 ~ 5483946 (+)
CI01000016_05445824_05454816 EPN1 coding upstream 320644 5445824 ~ 5455416 (+)
CI01000016_05405791_05407797 AICDA coding upstream 368097 5405791 ~ 5407963 (+)
CI01000016_05797506_05798075 NA coding downstream 21196 5797506 ~ 5799585 (+)
CI01000016_05828974_05833309 JOSD2, JOS2 coding downstream 52088 5828398 ~ 5833377 (+)
CI01000016_05837368_05837667 NA coding downstream 60273 5836583 ~ 5837927 (+)
CI01000016_05878037_05885761 FLCN coding downstream 101727 5878037 ~ 5886192 (+)
CI01000016_05891870_05892528 NA coding downstream 115560 5891870 ~ 5892679 (+)
G96048 NA non-coding upstream 19682 5756097 ~ 5756378 (+)
G96047 NA non-coding upstream 20166 5755638 ~ 5755894 (+)
G96035 NA non-coding upstream 43597 5732257 ~ 5732463 (+)
G96034 NA non-coding upstream 48985 5726845 ~ 5727075 (+)
G95933 NA non-coding upstream 122425 5649852 ~ 5653635 (+)
G96076 NA non-coding downstream 146451 5922761 ~ 5922984 (+)
G96079 NA non-coding downstream 154082 5930392 ~ 5934791 (+)
G95967 NA non-coding downstream 207755 5984065 ~ 5984824 (+)
G96087 NA non-coding downstream 220188 5996498 ~ 5996720 (+)
G95792 NA other upstream 550119 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 939405 4829592 ~ 4837457 (+)
G95648 NA other upstream 1502155 4272636 ~ 4273905 (+)
G95439 NA other upstream 1912203 3862175 ~ 3862305 (+)
G96389 NA other downstream 1384331 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 2007755 7783987 ~ 7784996 (+)
G97824 NA other downstream 2238053 8014363 ~ 8015775 (+)
G98288 NA other downstream 3219788 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 4019321 9795950 ~ 9842576 (+)

Expression


Co-expression Network