G96087


Basic Information

Item Value
gene id G96087
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5996498 ~ 5996720 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109285
CACAGCACAGGTCTTTCACTGCTATATCACATGGTTAACTCACAATGATAATGGAAATAGCTGAGATTCACTGGGGGAATCTAGTTGGGAAGCTTATTTTTAATACAAGGCCTAACAATTGCAATTAATCTATATTTAATTGCTAAAGTCCGAGCTACAACATGTATCTTACTCCATACAAAAGTGCGTCACTGTTTTTCCTCACAGATTCCCTGTACTGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109285 True 223 lncRNA 0.38 1 5996498 5996720

Neighbor

gene id symbol gene type direction distance location
CI01000016_05966893_05982233 RUSC1 coding upstream 13853 5964215 ~ 5982645 (+)
CI01000016_05960829_05963788 FDPS, FPPS coding upstream 32710 5960829 ~ 5963788 (+)
CI01000016_05956820_05958904 NA coding upstream 37581 5956583 ~ 5958917 (+)
CI01000016_05942798_05943229 NA coding upstream 53048 5942798 ~ 5943450 (+)
CI01000016_05921722_05928898 NA coding upstream 66770 5921193 ~ 5929728 (+)
CI01000016_06030950_06038330 DAP3 coding downstream 34230 6030950 ~ 6038330 (+)
CI01000016_06038939_06045122 GBA coding downstream 42219 6038939 ~ 6045402 (+)
CI01000016_06058748_06068258 POLR3C coding downstream 62028 6058748 ~ 6068648 (+)
CI01000016_06158996_06159538 NA coding downstream 162002 6158722 ~ 6159725 (+)
CI01000016_06174800_06210259 DEPDC6, DEPTOR coding downstream 178080 6174800 ~ 6211031 (+)
G95967 NA non-coding upstream 11674 5984065 ~ 5984824 (+)
G96079 NA non-coding upstream 61707 5930392 ~ 5934791 (+)
G96076 NA non-coding upstream 73514 5922761 ~ 5922984 (+)
G96058 NA non-coding upstream 220188 5776060 ~ 5776310 (+)
G96092 NA non-coding downstream 79658 6076378 ~ 6078295 (+)
G96095 NA non-coding downstream 84032 6080752 ~ 6081244 (+)
G96096 NA non-coding downstream 84615 6081335 ~ 6118470 (+)
G95949 NA non-coding downstream 216258 6212978 ~ 6213633 (+)
G96011 NA non-coding downstream 243116 6239836 ~ 6247237 (+)
CI01000016_05405791_05407797 AICDA other upstream 588635 5405791 ~ 5407963 (+)
G95792 NA other upstream 770557 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1159843 4829592 ~ 4837457 (+)
G95648 NA other upstream 1722593 4272636 ~ 4273905 (+)
G95439 NA other upstream 2132641 3862175 ~ 3862305 (+)
G96389 NA other downstream 1163921 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1787345 7783987 ~ 7784996 (+)
G97824 NA other downstream 2017643 8014363 ~ 8015775 (+)
G98288 NA other downstream 2999378 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3798911 9795950 ~ 9842576 (+)

Expression


Co-expression Network