Gene
RNA
| Item | Value |
|---|---|
| gene id | G97333 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 6142747 ~ 6143053 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU110778 | True | 307 | lncRNA | 0.39 | 1 | 6142747 | 6143053 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_06138000_06138287 | NA | coding | downstream | 4322 | 6137607 ~ 6138425 (-) |
| CI01000016_06131958_06135495 | NA | coding | downstream | 7252 | 6130778 ~ 6135495 (-) |
| CI01000016_06069691_06109173 | ITGA10 | coding | downstream | 33574 | 6069290 ~ 6109173 (-) |
| CI01000016_06048748_06054049 | RNF115 | coding | downstream | 88698 | 6048740 ~ 6054049 (-) |
| CI01000016_06018338_06023791 | NA | coding | downstream | 118956 | 6018330 ~ 6023791 (-) |
| CI01000016_06146332_06147633 | NA | coding | upstream | 3170 | 6146223 ~ 6147667 (-) |
| CI01000016_06147867_06148327 | NA | coding | upstream | 4655 | 6147708 ~ 6148348 (-) |
| CI01000016_06162256_06162804 | NA | coding | upstream | 19101 | 6162154 ~ 6163022 (-) |
| CI01000016_06168667_06173080 | DSCC1 | coding | upstream | 25614 | 6168667 ~ 6173080 (-) |
| CI01000016_06253158_06263923 | NA | coding | upstream | 109778 | 6252831 ~ 6264056 (-) |
| G97310 | NA | non-coding | downstream | 47512 | 6094880 ~ 6095235 (-) |
| G97303 | NA | non-coding | downstream | 62251 | 6080274 ~ 6080496 (-) |
| G97201 | NA | non-coding | downstream | 157923 | 5984069 ~ 5984824 (-) |
| G97193 | NA | non-coding | downstream | 178406 | 5960341 ~ 5964341 (-) |
| G97282 | NA | non-coding | downstream | 183274 | 5952958 ~ 5959473 (-) |
| G97335 | NA | non-coding | upstream | 8388 | 6151441 ~ 6151680 (-) |
| G97224 | NA | non-coding | upstream | 69499 | 6212552 ~ 6212818 (-) |
| G97187 | NA | non-coding | upstream | 69942 | 6212995 ~ 6213650 (-) |
| G97237 | NA | non-coding | upstream | 70859 | 6213912 ~ 6214493 (-) |
| G97357 | NA | non-coding | upstream | 74973 | 6218026 ~ 6218316 (-) |
| CI01000016_05412782_05415867 | NA | other | downstream | 724530 | 5412248 ~ 5415906 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | downstream | 811901 | 5325519 ~ 5332874 (-) |
| CI01000016_04921091_04922518 | NA | other | downstream | 1219343 | 4918975 ~ 4922518 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 2211696 | 3920055 ~ 3931162 (-) |
| CI01000016_03647744_03675574 | NA | other | downstream | 2477434 | 3647653 ~ 3675585 (-) |
| G97341 | NA | other | upstream | 15933 | 6158986 ~ 6159721 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 2745780 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 2793736 | 8925960 ~ 8945229 (-) |
| G98679 | NA | other | upstream | 3091943 | 9234996 ~ 9239929 (-) |
| G98691 | NA | other | upstream | 3113049 | 9256102 ~ 9257611 (-) |
