G97341


Basic Information

Item Value
gene id G97341
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6158986 ~ 6159721 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110786
TAATAAATGATTGAATTAATGAGGCAAGAGCATATAGAAAATGTTTGTGTGTTCACAATTTGCATTCATTATGAATATGCGCAGACATCCTCATATTACTGCAGTTTCAGCATTGGTTAGATAAAAATGAAAGCAGCAAAGCTACAAAGTAACATCCAGACATTTTTACTGCAGGTCATGTGTCTAGATTTCAAACAGCTCTTCAAAAGGTATAAAGCTTGCATTTACCATTGCTTTACTGCAGTCTGCTTTGTTATTATCTGGTGTAGCATCATTTGTGTTTGCCTCAAAATGAACAGGTTTGCATTTATTTTCAATTTTATCACAGCCAAGAATAGCATGTTGTTCCTGAACTTTGACTTTCTTGACCTGCTTCTTATTCTTGATGTAAACAGTGAAGAACTTGAGAGGCTTCTTGCTGATGCAGAGGTTTCCCTGATACTCCTTTCCTCCTGATGAACACACAGCCATCACCATTCTTGCTTCACTGATGGGAAAGAATGATTGAATAGGCCTGTCCCAGGTTTTGATTTTGGTAATGAACTTCTGCCATTCTCTTAGATTGCGTGGATCAGTTGGGATGTCCTTGCGTAGGTGACGGTGAAGGAAAGTATCATACGCATCCTTTTTCTTCGCTTTAGTGCAGGGCTCAGATGGGTGCAGTATGTCCAGCTCACTCAGACAAGTGTGGAGCGTGACAGTCAAGATGACCAAGAATGACAGCATTTTTACAATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110786 True 736 TUCP 0.40 1 6158986 6159721

Neighbor

gene id symbol gene type direction distance location
CI01000016_06147867_06148327 NA coding downstream 10638 6147708 ~ 6148348 (-)
CI01000016_06146332_06147633 NA coding downstream 11319 6146223 ~ 6147667 (-)
CI01000016_06138000_06138287 NA coding downstream 20561 6137607 ~ 6138425 (-)
CI01000016_06131958_06135495 NA coding downstream 23491 6130778 ~ 6135495 (-)
CI01000016_06069691_06109173 ITGA10 coding downstream 49813 6069290 ~ 6109173 (-)
CI01000016_06162256_06162804 NA coding upstream 2433 6162154 ~ 6163022 (-)
CI01000016_06168667_06173080 DSCC1 coding upstream 8946 6168667 ~ 6173080 (-)
CI01000016_06253158_06263923 NA coding upstream 93110 6252831 ~ 6264056 (-)
CI01000016_06387119_06398090 MRPL13 coding upstream 226861 6386582 ~ 6398090 (-)
CI01000016_06424554_06462224 SNTB1 coding upstream 264394 6424115 ~ 6462618 (-)
G97335 NA non-coding downstream 7306 6151441 ~ 6151680 (-)
G97333 NA non-coding downstream 15933 6142747 ~ 6143053 (-)
G97310 NA non-coding downstream 63751 6094880 ~ 6095235 (-)
G97303 NA non-coding downstream 78490 6080274 ~ 6080496 (-)
G97201 NA non-coding downstream 174162 5984069 ~ 5984824 (-)
G97224 NA non-coding upstream 52831 6212552 ~ 6212818 (-)
G97187 NA non-coding upstream 53274 6212995 ~ 6213650 (-)
G97237 NA non-coding upstream 54191 6213912 ~ 6214493 (-)
G97357 NA non-coding upstream 58305 6218026 ~ 6218316 (-)
G97358 NA non-coding upstream 59506 6219227 ~ 6220930 (-)
CI01000016_05412782_05415867 NA other downstream 740769 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 828140 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1235582 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2227935 3920055 ~ 3931162 (-)
CI01000016_03647744_03675574 NA other downstream 2493673 3647653 ~ 3675585 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2729112 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2777068 8925960 ~ 8945229 (-)
G98679 NA other upstream 3075275 9234996 ~ 9239929 (-)
G98691 NA other upstream 3096381 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 3349901 9509622 ~ 9512428 (-)

Expression


Co-expression Network