G97224


Basic Information

Item Value
gene id G97224
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6212552 ~ 6212818 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU110661
TTTTTGGTGTGCCAAAAAAACGACTTATATAGTGATGGCCGATTTCAAAACACTGCTTCATTAAGCTTCGGAGCGTCATGAATCAGCGTGCTGAATCATGATTCAGATTGCGTGTCAAACTGCTGAAATCACGTGACTTTGGCGCTCCGAACTGCTGATTCGACACAAAAGATTCATAACGCTCCGAAGCTTCATGAAGCAGTGTTTTGAAATCGGCCATCACTATGTAAGTCGTTAATTTTTTTTTTTTTTTTGGCGCACCAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU110661 True 267 lncRNA 0.40 1 6212552 6212818

Neighbor

gene id symbol gene type direction distance location
CI01000016_06168667_06173080 DSCC1 coding downstream 39472 6168667 ~ 6173080 (-)
CI01000016_06162256_06162804 NA coding downstream 49530 6162154 ~ 6163022 (-)
CI01000016_06147867_06148327 NA coding downstream 64204 6147708 ~ 6148348 (-)
CI01000016_06146332_06147633 NA coding downstream 64885 6146223 ~ 6147667 (-)
CI01000016_06138000_06138287 NA coding downstream 74127 6137607 ~ 6138425 (-)
CI01000016_06253158_06263923 NA coding upstream 40013 6252831 ~ 6264056 (-)
CI01000016_06387119_06398090 MRPL13 coding upstream 173764 6386582 ~ 6398090 (-)
CI01000016_06424554_06462224 SNTB1 coding upstream 211297 6424115 ~ 6462618 (-)
CI01000016_06508677_06514489 HAS2 coding upstream 295319 6508137 ~ 6514489 (-)
CI01000016_06649431_06675045 ANKIB1, ANKIB1B coding upstream 435638 6648456 ~ 6677265 (-)
G97335 NA non-coding downstream 60872 6151441 ~ 6151680 (-)
G97333 NA non-coding downstream 69499 6142747 ~ 6143053 (-)
G97310 NA non-coding downstream 117317 6094880 ~ 6095235 (-)
G97303 NA non-coding downstream 132056 6080274 ~ 6080496 (-)
G97201 NA non-coding downstream 227728 5984069 ~ 5984824 (-)
G97187 NA non-coding upstream 177 6212995 ~ 6213650 (-)
G97237 NA non-coding upstream 1094 6213912 ~ 6214493 (-)
G97357 NA non-coding upstream 5208 6218026 ~ 6218316 (-)
G97358 NA non-coding upstream 6409 6219227 ~ 6220930 (-)
G97364 NA non-coding upstream 21507 6234325 ~ 6270577 (-)
G97341 NA other downstream 52831 6158986 ~ 6159721 (-)
CI01000016_05412782_05415867 NA other downstream 794335 5412248 ~ 5415906 (-)
CI01000016_05325805_05330265 COX6B2 other downstream 881706 5325519 ~ 5332874 (-)
CI01000016_04921091_04922518 NA other downstream 1289148 4918975 ~ 4922518 (-)
CI01000016_03921124_03930996 NA other downstream 2281501 3920055 ~ 3931162 (-)
CI01000016_08893013_08893496 NPPCL, ANFC1 other upstream 2676015 8888833 ~ 8894737 (-)
CI01000016_08926089_08945071 NA other upstream 2723971 8925960 ~ 8945229 (-)
G98679 NA other upstream 3022178 9234996 ~ 9239929 (-)
G98691 NA other upstream 3043284 9256102 ~ 9257611 (-)
CI01000016_09510177_09512196 ID4 other upstream 3296804 9509622 ~ 9512428 (-)

Expression


Co-expression Network