G95949


Basic Information

Item Value
gene id G95949
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6212978 ~ 6213633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU109126
TGTGTTCCGAAGATGAATGAAGGTCTTACGGGTGTGGAACGGCATTAAGGGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAACCTATGTGCCCATCTTTCACACATTCCTCACTGCAGATACTACATTTTTGCAGGATGATTATTGTGCAATTGTACTTATTTGTATTGATGAGAATGACAATTACATTCACATGATAATCTTTTGTTTTAATGGAAAGTTTTAATCTTCTGCCTTAATGACCTGTATTGTGCTGCTAATTCTCACGGCTGGTCACGCAACGTCTCTAATTATAAAGGATATACCACGTCCTCTATTAAAGACAGTAGGCTAGGTGATTTTGGGGGTGATCATGACAATCAGCATCAGGGTAGTCTGTTAAATACTGGTCCAGATATGTGCAACATATTCCCCACTTAGGGGAAGTATAAGCTAATCTAATAATCGTATAGTTAGTCTATTCTGAAATAGAACACAATGTAGAGTTTTATTCAAAACTCTTTGAGTTAAGTGTAACTGAGTTCAATGCACGTGTCTGTACAAGGAAGTAAGCTCATGGTACCATATTGCCTATTTGTATTTCTTCGTGCAGCTCTAAATCATGATTAATGTGTGTTTGATTAATGGCTTATTAAACGC

Function

NR:

description
PREDICTED: lysocardiolipin acyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109126 True 656 lncRNA 0.36 1 6212978 6213633

Neighbor

gene id symbol gene type direction distance location
CI01000016_06174800_06210259 DEPDC6, DEPTOR coding upstream 1947 6174800 ~ 6211031 (+)
CI01000016_06158996_06159538 NA coding upstream 53253 6158722 ~ 6159725 (+)
CI01000016_06058748_06068258 POLR3C coding upstream 144330 6058748 ~ 6068648 (+)
CI01000016_06038939_06045122 GBA coding upstream 167576 6038939 ~ 6045402 (+)
CI01000016_06030950_06038330 DAP3 coding upstream 174648 6030950 ~ 6038330 (+)
CI01000016_06270425_06375483 COL14A1A, COL14A1 coding downstream 56792 6270425 ~ 6375483 (+)
CI01000016_06398455_06420062 MTBP coding downstream 184822 6398455 ~ 6420138 (+)
CI01000016_06684506_06687365 NA coding downstream 470873 6684506 ~ 6687405 (+)
CI01000016_06756366_06782229 SETD2 coding downstream 542733 6756366 ~ 6782619 (+)
CI01000016_06813604_06813789 NA coding downstream 599971 6809807 ~ 6814285 (+)
G96096 NA non-coding upstream 94508 6081335 ~ 6118470 (+)
G96095 NA non-coding upstream 131734 6080752 ~ 6081244 (+)
G96092 NA non-coding upstream 134683 6076378 ~ 6078295 (+)
G96087 NA non-coding upstream 216258 5996498 ~ 5996720 (+)
G95967 NA non-coding upstream 228154 5984065 ~ 5984824 (+)
G96011 NA non-coding downstream 26203 6239836 ~ 6247237 (+)
G95974 NA non-coding downstream 162467 6376100 ~ 6376980 (+)
G96163 NA non-coding downstream 270944 6484577 ~ 6484776 (+)
G96236 NA non-coding downstream 477557 6691190 ~ 6691843 (+)
G95992 NA non-coding downstream 513494 6727127 ~ 6727496 (+)
CI01000016_05405791_05407797 AICDA other upstream 805115 5405791 ~ 5407963 (+)
G95792 NA other upstream 987037 5219880 ~ 5225941 (+)
CI01000016_04829592_04837305 NA other upstream 1376323 4829592 ~ 4837457 (+)
G95648 NA other upstream 1939073 4272636 ~ 4273905 (+)
G95439 NA other upstream 2349121 3862175 ~ 3862305 (+)
G96389 NA other downstream 947008 7160641 ~ 7161290 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other downstream 1570432 7783987 ~ 7784996 (+)
G97824 NA other downstream 1800730 8014363 ~ 8015775 (+)
G98288 NA other downstream 2782465 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 3581998 9795950 ~ 9842576 (+)

Expression


Co-expression Network