Gene
RNA
| Item | Value |
|---|---|
| gene id | G97436 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 6376053 ~ 6376974 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU110904 | True | 922 | lncRNA | 0.34 | 1 | 6376053 | 6376974 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_06253158_06263923 | NA | coding | downstream | 111997 | 6252831 ~ 6264056 (-) |
| CI01000016_06168667_06173080 | DSCC1 | coding | downstream | 202973 | 6168667 ~ 6173080 (-) |
| CI01000016_06162256_06162804 | NA | coding | downstream | 213031 | 6162154 ~ 6163022 (-) |
| CI01000016_06147867_06148327 | NA | coding | downstream | 227705 | 6147708 ~ 6148348 (-) |
| CI01000016_06146332_06147633 | NA | coding | downstream | 228386 | 6146223 ~ 6147667 (-) |
| CI01000016_06387119_06398090 | MRPL13 | coding | upstream | 9608 | 6386582 ~ 6398090 (-) |
| CI01000016_06424554_06462224 | SNTB1 | coding | upstream | 47141 | 6424115 ~ 6462618 (-) |
| CI01000016_06508677_06514489 | HAS2 | coding | upstream | 131163 | 6508137 ~ 6514489 (-) |
| CI01000016_06649431_06675045 | ANKIB1, ANKIB1B | coding | upstream | 271482 | 6648456 ~ 6677265 (-) |
| CI01000016_06692104_06696977 | NA | coding | upstream | 314913 | 6691887 ~ 6697324 (-) |
| G97446 | NA | non-coding | downstream | 13311 | 6361913 ~ 6362742 (-) |
| G97395 | NA | non-coding | downstream | 60809 | 6272579 ~ 6315244 (-) |
| G97364 | NA | non-coding | downstream | 105476 | 6234325 ~ 6270577 (-) |
| G97370 | NA | non-coding | downstream | 135834 | 6239852 ~ 6240219 (-) |
| G97358 | NA | non-coding | downstream | 155123 | 6219227 ~ 6220930 (-) |
| G97465 | NA | non-coding | upstream | 93458 | 6470432 ~ 6470771 (-) |
| G97469 | NA | non-coding | upstream | 109115 | 6486089 ~ 6551029 (-) |
| G97468 | NA | non-coding | upstream | 109756 | 6486730 ~ 6487203 (-) |
| G97516 | NA | non-coding | upstream | 264893 | 6641867 ~ 6642112 (-) |
| G97517 | NA | non-coding | upstream | 265296 | 6642270 ~ 6642805 (-) |
| G97341 | NA | other | downstream | 216332 | 6158986 ~ 6159721 (-) |
| CI01000016_05412782_05415867 | NA | other | downstream | 957836 | 5412248 ~ 5415906 (-) |
| CI01000016_05325805_05330265 | COX6B2 | other | downstream | 1045207 | 5325519 ~ 5332874 (-) |
| CI01000016_04921091_04922518 | NA | other | downstream | 1452649 | 4918975 ~ 4922518 (-) |
| CI01000016_03921124_03930996 | NA | other | downstream | 2445002 | 3920055 ~ 3931162 (-) |
| CI01000016_08893013_08893496 | NPPCL, ANFC1 | other | upstream | 2511859 | 8888833 ~ 8894737 (-) |
| CI01000016_08926089_08945071 | NA | other | upstream | 2559815 | 8925960 ~ 8945229 (-) |
| G98679 | NA | other | upstream | 2858022 | 9234996 ~ 9239929 (-) |
| G98691 | NA | other | upstream | 2879128 | 9256102 ~ 9257611 (-) |
| CI01000016_09510177_09512196 | ID4 | other | upstream | 3132648 | 9509622 ~ 9512428 (-) |
