Gene
RNA
| Item | Value |
|---|---|
| gene id | G95974 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 6376100 ~ 6376980 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU109156 | True | 881 | lncRNA | 0.35 | 1 | 6376100 | 6376980 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000016_06270425_06375483 | COL14A1A, COL14A1 | coding | upstream | 617 | 6270425 ~ 6375483 (+) |
| CI01000016_06174800_06210259 | DEPDC6, DEPTOR | coding | upstream | 165069 | 6174800 ~ 6211031 (+) |
| CI01000016_06158996_06159538 | NA | coding | upstream | 216375 | 6158722 ~ 6159725 (+) |
| CI01000016_06058748_06068258 | POLR3C | coding | upstream | 307452 | 6058748 ~ 6068648 (+) |
| CI01000016_06038939_06045122 | GBA | coding | upstream | 330698 | 6038939 ~ 6045402 (+) |
| CI01000016_06398455_06420062 | MTBP | coding | downstream | 21475 | 6398455 ~ 6420138 (+) |
| CI01000016_06684506_06687365 | NA | coding | downstream | 307526 | 6684506 ~ 6687405 (+) |
| CI01000016_06756366_06782229 | SETD2 | coding | downstream | 379386 | 6756366 ~ 6782619 (+) |
| CI01000016_06813604_06813789 | NA | coding | downstream | 436624 | 6809807 ~ 6814285 (+) |
| CI01000016_06890651_06904100 | NA | coding | downstream | 513166 | 6890146 ~ 6904634 (+) |
| G96011 | NA | non-coding | upstream | 128863 | 6239836 ~ 6247237 (+) |
| G95949 | NA | non-coding | upstream | 162467 | 6212978 ~ 6213633 (+) |
| G96096 | NA | non-coding | upstream | 257630 | 6081335 ~ 6118470 (+) |
| G96095 | NA | non-coding | upstream | 294856 | 6080752 ~ 6081244 (+) |
| G96092 | NA | non-coding | upstream | 297805 | 6076378 ~ 6078295 (+) |
| G96163 | NA | non-coding | downstream | 107597 | 6484577 ~ 6484776 (+) |
| G96236 | NA | non-coding | downstream | 314210 | 6691190 ~ 6691843 (+) |
| G95992 | NA | non-coding | downstream | 350147 | 6727127 ~ 6727496 (+) |
| G96257 | NA | non-coding | downstream | 429741 | 6806721 ~ 6807026 (+) |
| CI01000016_05405791_05407797 | AICDA | other | upstream | 968237 | 5405791 ~ 5407963 (+) |
| G95792 | NA | other | upstream | 1150159 | 5219880 ~ 5225941 (+) |
| CI01000016_04829592_04837305 | NA | other | upstream | 1539445 | 4829592 ~ 4837457 (+) |
| G95648 | NA | other | upstream | 2102195 | 4272636 ~ 4273905 (+) |
| G95439 | NA | other | upstream | 2512243 | 3862175 ~ 3862305 (+) |
| G96389 | NA | other | downstream | 783661 | 7160641 ~ 7161290 (+) |
| CI01000016_07784248_07784757 | TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S | other | downstream | 1407085 | 7783987 ~ 7784996 (+) |
| G97824 | NA | other | downstream | 1637383 | 8014363 ~ 8015775 (+) |
| G98288 | NA | other | downstream | 2619118 | 8996098 ~ 9002717 (+) |
| CI01000016_09796196_09842235 | NA | other | downstream | 3418651 | 9795950 ~ 9842576 (+) |
